Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_D21
         (902 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    26   0.41 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   0.71 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.94 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    25   1.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.9  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.7  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 26.2 bits (55), Expect = 0.41
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 446 YRNINRKYKNLNSVIIRYFNFVNQIKV 526
           Y N N  Y N N  +    N++ QI V
Sbjct: 94  YNNYNNNYNNYNKKLYYNINYIEQIPV 120


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 25.4 bits (53), Expect = 0.71
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 419 NCYWDNEH*YRNINRKYKNLNSVIIRYFNFVNQIKV 526
           N Y +N + Y N N  Y N    +    N++ QI V
Sbjct: 328 NNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPV 363


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.94
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 216  VSTQYVYYTKKDSCRKLAGEQIP 284
            V TQY  YTK D+  +   +++P
Sbjct: 1209 VITQYTVYTKADNAEEPTSQKVP 1231


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 157 IIIGKKYAHFMEFI*SNIVMSQRSMCITRRKIHAENWLG 273
           +I+G     ++ F   NIV S    CI+ R      WLG
Sbjct: 276 VIMGVFLICWVPFFCVNIVTSYCKTCISGRAFQVLTWLG 314


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = -3

Query: 420 FEHYCQDIEYDERN*NIKLFVTVLIDLT----KLRIWN 319
           FE  C  I+Y     NI+  +T+    T      R+WN
Sbjct: 150 FEALCNHIKYSTNKGNIRSAITIFPQRTDGKHDYRVWN 187


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 372 CFSSSHHTQYPDNNVQTV 425
           C++S H  +Y  NN++ +
Sbjct: 332 CWNSEHFFEYGGNNIEII 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,122
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 16
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29267238
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)