Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_D19
         (969 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.34 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   9.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   9.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.34
 Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
 Frame = +1

Query: 523 PPPPPXXXAXGRXXGGXPXPX--PXXGGXPGXPP 618
           P P P         G  P P   P  GG PG PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.8 bits (54), Expect = 0.59
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +3

Query: 567 GGPXXXPXPXGGPXXPPPAXGGAAPXXPXPPXPPXXPP 680
           G P   P P   P  P           P P  PP  PP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 25.4 bits (53), Expect = 0.78
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +2

Query: 767 PPXPXGGGPPXXXXXXPXXGPPXXP 841
           P  P  G PP      P  GPP  P
Sbjct: 31  PQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +1

Query: 520 PPPPPPXXXAXGRXXGGXPXPXPXXGGXPGXPP 618
           P P P    +      G P P P  G  PG PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSP-PNPSQGPPPGGPP 52



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +1

Query: 598 GXPGXPPXXXGGRXXXPRSXPXXPXPXPPP 687
           G PG  P          R  P  P   PPP
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 11/36 (30%), Positives = 11/36 (30%)
 Frame = +2

Query: 725 PXPRPXXXAXXXXPPPXPXGGGPPXXXXXXPXXGPP 832
           P P     A     PP P  G PP      P    P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 16/67 (23%), Positives = 19/67 (28%)
 Frame = +3

Query: 486 PPGGGGXXXLGPXPPPPXXPXXGAXXGGGPXXXPXPXGGPXXPPPAXGGAAPXXPXPPXP 665
           PP   G   + P           +  GG     P   G P  P P     +   P P  P
Sbjct: 380 PPPNFGVSQVSPVSMSALVSAVRSPAGG---QLPPSAGAPMPPIPNMSNMSGMPPLPNMP 436

Query: 666 PXXPPXP 686
              P  P
Sbjct: 437 GSMPTMP 443


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +1

Query: 724 PXPPPRXPRXXXXPPPXPXXGRP 792
           P P P  PR    P   P   RP
Sbjct: 107 PQPRPPHPRLRREPEAEPGNNRP 129



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 9/23 (39%), Positives = 9/23 (39%)
 Frame = +1

Query: 724 PXPPPRXPRXXXXPPPXPXXGRP 792
           P P P  PR    P   P   RP
Sbjct: 133 PQPRPPHPRLRREPEAEPGNNRP 155


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 9.6
 Identities = 8/20 (40%), Positives = 8/20 (40%)
 Frame = +3

Query: 444 GGXXLXPLXXPXPPPPGGGG 503
           G     P   P PPPP   G
Sbjct: 333 GDSDTPPKPAPPPPPPSSSG 352



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 368 PPXPXPPXRPP 336
           PP P PP  PP
Sbjct: 338 PPKPAPPPPPP 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.155    0.556 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 260,088
Number of Sequences: 438
Number of extensions: 12109
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)