Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_D15
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S...    30   0.50 
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch...    29   1.2  
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    27   2.7  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    27   4.7  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    26   6.2  

>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 29.9 bits (64), Expect = 0.50
 Identities = 13/20 (65%), Positives = 13/20 (65%)
 Frame = +1

Query: 772 RNSVHFRRPKTFEPPRHPKY 831
           R S  FRRPKT E  R PKY
Sbjct: 26  RTSTTFRRPKTLELARKPKY 45


>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
           L25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 141

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 772 RNSVHFRRPKTFEPPRHPKY 831
           R S  FRRPKT +  R PKY
Sbjct: 26  RTSTTFRRPKTLQLSRKPKY 45


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +1

Query: 808 EPPRHPKYXGSXC 846
           EPPRHPKY    C
Sbjct: 358 EPPRHPKYKSERC 370


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = -1

Query: 740 LQPSSEXKCFSNRFHYFFLSLNPS----LFGLRCNLQFGNCW 627
           L P+   K FSN F  + + +NP     LFG RC L     W
Sbjct: 236 LAPAYAPKGFSNYFVDYIVKVNPKIMYHLFGRRCLLPSVTFW 277


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 605 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 694
           S+NCQ  +    +++C EA  D D G  K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,796,694
Number of Sequences: 5004
Number of extensions: 25447
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)