Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_D09
         (1251 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0130 + 13241085-13241151,13241268-13241339,13242458-132428...    32   1.1  
06_03_1146 - 28004896-28005554,28005664-28005844                       32   1.1  
12_02_1174 - 26696869-26698191                                         30   3.3  

>10_07_0130 +
           13241085-13241151,13241268-13241339,13242458-13242862,
           13243057-13243112,13244116-13244274,13244379-13244498,
           13244591-13245361,13245902-13246078,13246192-13246669,
           13247502-13248094
          Length = 965

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 680 RRXAGG*XKGRRXSWGSXGWFGXXGAXXGLXNEGXG 573
           R   GG    RR SWG+ GW G  G+     + G G
Sbjct: 864 REPGGGADSARRRSWGAEGWGGGAGSGAQRKDGGDG 899


>06_03_1146 - 28004896-28005554,28005664-28005844
          Length = 279

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
 Frame = +3

Query: 594 PXXSAPXXKPSXRPPXXXXTLSSAPRXSPXAXXQPPTTXVXXATPRARQXXGAPGXTLXN 773
           P  +     PS  P     T S +P  SP A    PTT    + P       +P  T   
Sbjct: 165 PSPAPAAATPSLAPSPVATTPSPSPSVSPMAPAPAPTTSTPSSPPAPAAMAPSPSTTPGG 224

Query: 774 XXATXPPGXT---XRTXPAXP 827
                PP  T     T PA P
Sbjct: 225 VAQPPPPPGTDGANATTPAAP 245


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 30.3 bits (65), Expect = 3.3
 Identities = 18/67 (26%), Positives = 20/67 (29%)
 Frame = +3

Query: 594 PXXSAPXXKPSXRPPXXXXTLSSAPRXSPXAXXQPPTTXVXXATPRARQXXGAPGXTLXN 773
           P    P   PS +PP         P   P +   PP T      P   Q    P  TL  
Sbjct: 159 PPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPPTRPPSVKPPVVQPKPQPPPTLPP 218

Query: 774 XXATXPP 794
                PP
Sbjct: 219 PSPPPPP 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,261,544
Number of Sequences: 37544
Number of extensions: 156034
Number of successful extensions: 246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3864364464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)