Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_D03
(893 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 227 7e-60
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 226 2e-59
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 225 3e-59
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 28 8.7
06_03_0290 - 19193707-19193752,19193822-19194090 28 8.7
04_04_0217 - 23693124-23693535,23693965-23694052,23694428-236945... 28 8.7
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 227 bits (556), Expect = 7e-60
Identities = 107/164 (65%), Positives = 133/164 (81%)
Frame = +3
Query: 138 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 317
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 318 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 497
+++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 498 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELR 629
CIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLK 182
Score = 36.7 bits (81), Expect = 0.025
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 571 QSERKCVKSLHATSLTLNSGEVVNKLIPDSIAKDIEKACHGIYPLR 708
Q RK V+ + + + + E+V+K IP+ I K+IEKA I+PL+
Sbjct: 163 QIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQ 208
Score = 35.1 bits (77), Expect = 0.076
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 710 SVCIRKVKVLXXPRFEISKLMELH 781
+V +RKVK+L P+F++ KLME+H
Sbjct: 209 NVFVRKVKILKAPKFDLGKLMEVH 232
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 226 bits (552), Expect = 2e-59
Identities = 107/164 (65%), Positives = 132/164 (80%)
Frame = +3
Query: 138 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 317
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 318 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 497
+++RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 498 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELR 629
CIGFT + ++TCYAQ +Q+R IR+KM EI+ + +L+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLK 182
Score = 37.1 bits (82), Expect = 0.019
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 571 QSERKCVKSLHATSLTLNSGEVVNKLIPDSIAKDIEKACHGIYPLR 708
Q RK V+ + + T + E+V+K IP+ I K+IEK+ I+PL+
Sbjct: 163 QIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQ 208
Score = 35.5 bits (78), Expect = 0.057
Identities = 14/24 (58%), Positives = 20/24 (83%)
Frame = +2
Query: 710 SVCIRKVKVLXXPRFEISKLMELH 781
+V IRKVK+L P+F++ KLME+H
Sbjct: 209 NVFIRKVKILKAPKFDLGKLMEVH 232
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 225 bits (551), Expect = 3e-59
Identities = 107/164 (65%), Positives = 132/164 (80%)
Frame = +3
Query: 138 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 317
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 318 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 497
+++RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 498 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELR 629
CIGFT + ++TCYAQ +Q+R IR+KM EI+ ++ +L+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLK 182
Score = 36.3 bits (80), Expect = 0.033
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +1
Query: 571 QSERKCVKSLHATSLTLNSGEVVNKLIPDSIAKDIEKACHGIYPLR 708
Q RK V+ + + + + E+V+K IP+ I K+IEKA I+PL+
Sbjct: 163 QIRRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQ 208
Score = 35.1 bits (77), Expect = 0.076
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +2
Query: 710 SVCIRKVKVLXXPRFEISKLMELH 781
+V +RKVK+L P+F++ KLME+H
Sbjct: 209 NVFVRKVKILKAPKFDLGKLMEVH 232
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 28.3 bits (60), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 631 EVVNKLIPDSIAKDIEKACHGIYPLR 708
++VN IPD + + ++K C IY LR
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLR 59
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 8.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 373 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 462
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>04_04_0217 -
23693124-23693535,23693965-23694052,23694428-23694503,
23694729-23694787,23694853-23694934,23695533-23696577,
23696700-23696998
Length = 686
Score = 28.3 bits (60), Expect = 8.7
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = -2
Query: 763 RDLETGXXQHFHLSDANTXAEGRCHGRPSRCPWQWSQESTCSPPPLS 623
R E Q H + + + GR G CP + S ST PP L+
Sbjct: 88 RKKEKKLEQTIHKKTSASLSHGRLGGENPSCPRRHSASSTSPPPELA 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,272,934
Number of Sequences: 37544
Number of extensions: 481033
Number of successful extensions: 1351
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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