Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_D03
         (893 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   212   3e-55
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       30   1.9  
Z69787-7|CAA93643.1|  214|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical ...    29   5.9  
AL021448-1|CAA16276.2|  898|Caenorhabditis elegans Hypothetical ...    28   7.8  
AF233290-1|AAF62516.1|  898|Caenorhabditis elegans maternal-effe...    28   7.8  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  212 bits (517), Expect = 3e-55
 Identities = 103/164 (62%), Positives = 125/164 (76%)
 Frame = +3

Query: 138 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 317
           VDPF+RK+WYD+KAP+MF+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL    ++E
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDLN---NSE 76

Query: 318 RSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 497
             FRKF+LIAE VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF
Sbjct: 77  ADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVF 136

Query: 498 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCEIITRDVTNSELR 629
            I FT K     +KT Y + +++R IR +M   I ++VT  +L+
Sbjct: 137 VIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLK 180



 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +1

Query: 631 EVVNKLIPDSIAKDIEKACHGIYPLR 708
           EVV+KLIPDSI KDIEK C  +YPL+
Sbjct: 181 EVVSKLIPDSIGKDIEKTCSKLYPLQ 206



 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 20/51 (39%), Positives = 30/51 (58%)
 Frame = +2

Query: 713 VCIRKVKVLXXPRFEISKLMELHXXXXXXXXXXXDKSERPEGYEPPVQXSV 865
           V IRKVK++  P+ ++ +L +LH           +K +RP+ YEPPVQ  V
Sbjct: 208 VYIRKVKIIKRPKVDLGRLHDLH-GDSITVGADGEKVDRPDDYEPPVQQEV 257


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 442  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 266
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 265  PFNPSEAI 242
              N SE++
Sbjct: 1182 VLNSSESL 1189


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 454 LASMRVCHFLTIHLSLSVVRSMPWKLQ-STLRPCTY-SAINLNLRKDLSASVSACRSARE 281
           +AS++    LT+ L L     +P  LQ   L+P T  S +  + ++  S S S+  S+  
Sbjct: 132 IASLQASSMLTVPL-LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSS 190

Query: 280 TSKTLPFNPSEA 245
           +S   PF PSE+
Sbjct: 191 SSAFHPFRPSES 202


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 442  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 266
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 265  PFNPSEAI 242
              N SE++
Sbjct: 1182 VLNSSESL 1189


>Z69787-7|CAA93643.1|  214|Caenorhabditis elegans Hypothetical
           protein C44C10.9a protein.
          Length = 214

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
 Frame = -2

Query: 703 EGRCHGRPSRCPW--QWSQESTCSPPPLSSELVTSRVMISHIFFLIALT*VCWA*HVLRW 530
           EG+      RC +  +    + C P   +       ++I+   FLIAL   C A ++ ++
Sbjct: 32  EGKNERYEFRCDYDLECCGRTCCIPQATTIPFWLMLILIALAIFLIALLLACLAYYLAKY 91

Query: 529 L-----KESLLVKPMQKTRRTYPSVV 467
           L     KE  +  PMQ+T    P  V
Sbjct: 92  LKSRPKKEKFIPSPMQETTLMMPKPV 117


>AF000265-7|AAB52941.1|  893|Caenorhabditis elegans Hypothetical
           protein C18E3.3 protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 219 VNRTQGTKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIA-EYVQGRNVLCNFHGMD 395
           + RT+ +KI S GL  ++ E S  ++    +A R +R F   A EY+ G N++    G  
Sbjct: 144 LKRTKESKIGS-GLPRKLEEDS--NISEFHNAHRFYRSFLEAAVEYLYGYNIMWEIDGGG 200

Query: 396 LTTDKLRW 419
              D++ W
Sbjct: 201 RLEDEINW 208


>AL021448-1|CAA16276.2|  898|Caenorhabditis elegans Hypothetical
           protein Y2H9A.1 protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
 Frame = +1

Query: 472 PMDTFYVSSALVSPIRTP*ANARRATPSTLRSEQSERKCVKSLHATSLTLNSGEVVNKLI 651
           P D          P +      R ATP    SE S     K   A  LT    ++++  I
Sbjct: 15  PQDGIVEKEGPNKPFKKKNVKQRNATPQGAGSETSSNAEDKQEEAPILTNAPKDIISMQI 74

Query: 652 PDSIA--KDIEKACHGIYPLRXCLHPKGESVEXAPFRDLEVD 771
            ++ A   + E+     YP     H   + +  +PF  +E D
Sbjct: 75  QETKAFLSEYEEFVDTDYPKTTFTHVPRKFLSVSPFTPIEAD 116


>AF233290-1|AAF62516.1|  898|Caenorhabditis elegans maternal-effect
           sterile 4 protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
 Frame = +1

Query: 472 PMDTFYVSSALVSPIRTP*ANARRATPSTLRSEQSERKCVKSLHATSLTLNSGEVVNKLI 651
           P D          P +      R ATP    SE S     K   A  LT    ++++  I
Sbjct: 15  PQDGIVEKEGPNKPFKKKNVKQRNATPQGAGSETSSNAEDKQEEAPILTNAPKDIISMQI 74

Query: 652 PDSIA--KDIEKACHGIYPLRXCLHPKGESVEXAPFRDLEVD 771
            ++ A   + E+     YP     H   + +  +PF  +E D
Sbjct: 75  QETKAFLSEYEEFVDTDYPKTTFTHVPRKFLSVSPFTPIEAD 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,333,191
Number of Sequences: 27780
Number of extensions: 399971
Number of successful extensions: 1137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)