Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_D01
(1295 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 32 0.20
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 31 0.26
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 30 0.61
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.61
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 27 4.3
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 26 9.9
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 9.9
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 31.9 bits (69), Expect = 0.20
Identities = 26/106 (24%), Positives = 27/106 (25%), Gaps = 3/106 (2%)
Frame = -1
Query: 1115 FFFXXFXXFFFXXFFXXXXFFXXXFXXFFFXXFFXXXXXXFXFXXXXFFXXXXFXXFFFX 936
FFF F F F F F FF F FFF
Sbjct: 27 FFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFFFFS 86
Query: 935 XXXXXX---FFXXXFXXFXXXFXFFFFFXXFXFXXFFFXFFFXXFF 807
F F FFF+F F F F F FF
Sbjct: 87 HCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFF 132
Score = 26.6 bits (56), Expect = 7.5
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = -2
Query: 841 FFFXXFFFXXFFXXXXFFXFXXFXFFFXXXFXXXFFFFXXXXXFFXXXFXF 689
FF+ FFF FF F F + F FF F F F
Sbjct: 74 FFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLF 124
Score = 26.6 bits (56), Expect = 7.5
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -3
Query: 636 FFXFFXXFFXXFXFXXFFFXXXFFFFFF 553
FF FF +F F F F F F FFF
Sbjct: 107 FFCFFF-YFSLFSFFSFLFTSLHFNFFF 133
Score = 26.2 bits (55), Expect = 9.9
Identities = 31/130 (23%), Positives = 34/130 (26%), Gaps = 10/130 (7%)
Frame = -1
Query: 1118 FFF---FXXFXXFFFXXFFXXXXFFXXXFXXFF-----FXXFFXXXXXXFXFXXXXFFXX 963
FFF F F FF FF FF + F F F F
Sbjct: 5 FFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKL-PY 63
Query: 962 XXFXXFFFXXXXXXXFFXXXFXXFXXXFXFFFFFXXFX--FXXFFFXFFFXXFFXFXXFF 789
F FF F F F + FF FF+ F F F
Sbjct: 64 HHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFL 123
Query: 788 XFXXXXFFFF 759
FFF
Sbjct: 124 FTSLHFNFFF 133
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 31.5 bits (68), Expect = 0.26
Identities = 19/63 (30%), Positives = 24/63 (38%)
Frame = +3
Query: 729 KKKKXXKKXXKKKKXXXXKXKKXXKXKKXXKKKXKKKXXKXKXXKKKKKXKXXXKXXKXX 908
K+KK K KKK K +K KKK K+ K K KK+ +
Sbjct: 167 KRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKK 226
Query: 909 XKK 917
KK
Sbjct: 227 KKK 229
Score = 27.9 bits (59), Expect = 3.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 557 KKKKKXXKKKXKXKXXKXKKXXKKXKKKK 643
KKKKK KKK K K +K K++K
Sbjct: 197 KKKKKEHKKKDKESSSKKRKSGSSDKEEK 225
Score = 27.5 bits (58), Expect = 4.3
Identities = 18/68 (26%), Positives = 24/68 (35%)
Frame = +2
Query: 686 KKXKXXXKKXXXXXKKKKXXXKXXXKKKXKXXKXKKXXXXKKXXKKKXXKKKXXXKXKXK 865
K+ K KKK KK + KK KK K+ KK+ +
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKE 223
Query: 866 KKKXKXXK 889
+KK K K
Sbjct: 224 EKKKKKIK 231
Score = 27.5 bits (58), Expect = 4.3
Identities = 17/53 (32%), Positives = 20/53 (37%)
Frame = +3
Query: 789 KKXXKXKKXXKKKXKKKXXKXKXXKKKKKXKXXXKXXKXXXKKXXXXXXXKKK 947
K+ + K KKK KKK KK K K K KK K+K
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRK 216
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 526 KKXXKXXXXKKKKKKXXXKKKXXKXKXXKKXXKKXKKKKXXK 651
KK K KKK+ K K+ K + K+ KKKK K
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIK 231
Score = 26.2 bits (55), Expect = 9.9
Identities = 23/62 (37%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Frame = +3
Query: 732 KKKXXKKXXKKKKXXXXKXKKXXKXKKXX-KKKXKKKXXK-------XKXXKKKKKXKXX 887
KKK KK K +K K KK KKK K+ K K KKKKK K
Sbjct: 174 KKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIKLK 233
Query: 888 XK 893
K
Sbjct: 234 DK 235
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 30.3 bits (65), Expect = 0.61
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = -1
Query: 902 FXXFXXXFXFFFFFXXFXFXXFFFXFFFXXFFXFXXFFXFXXXXFFFF 759
F F F FF F F F F F + F FFFF
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFF 160
Score = 28.3 bits (60), Expect = 2.4
Identities = 16/54 (29%), Positives = 17/54 (31%)
Frame = -1
Query: 893 FXXXFXFFFFFXXFXFXXFFFXFFFXXFFXFXXFFXFXXXXFFFFXXFFXXFFF 732
F FFFF F F F F F F +F F F F F
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVF 166
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Frame = -3
Query: 660 FXXFXXFFFFXFFXXFFXXFXFXXFFFXXXFFFFF--FXXXXFXXFFXXXXFXFXXFXY 490
F FFFF F F FF F +F F F FF F F +
Sbjct: 113 FRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLF 171
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.3 bits (65), Expect = 0.61
Identities = 26/150 (17%), Positives = 60/150 (40%), Gaps = 1/150 (0%)
Frame = +3
Query: 759 KKKKXXXXKXKKXXKXKKXXKKKXKKKXXKXKXXKKKKKXKXXXKXXKXXXK-KXXXXXX 935
++K + K + ++ K+K +++ K + +KK+ K K K + +
Sbjct: 561 REKVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRREAERL 620
Query: 936 XKKKXXKXXXXKKXXXXKXKXXXXXXKKXXEKKXXKXXXKKXXXXKKXXKKKXXKXXKKK 1115
++ K K+ + K K+ EKK + +K +K +K+ K KK+
Sbjct: 621 AEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQK--REEKQKQKEREKKLKKQ 678
Query: 1116 KXXXXKKKXXXKXXXKXXXXKXXXXKKKXK 1205
+ ++K + + K ++K +
Sbjct: 679 QQEADREKMAREQRLREEEEKRILEERKRR 708
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 4.3
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +1
Query: 526 KKXXKXXXXKKKKKKXXXKKKXXKXKXXKKXXKKXKKKK 642
K K KK+KKK KKK ++ K KKKK
Sbjct: 457 KPSKKEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKK 495
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 9.9
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 526 KKXXKXXXXKKKKKKXXXKKKXXKXKXXKKXXKKXKKKKXXKXXK 660
K+ +KK+KK KKK + K +K K+K K K
Sbjct: 140 KREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESK 184
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 26.2 bits (55), Expect = 9.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -1
Query: 872 FFFFXXFXFXXFFFXFFFXXFFXFXXFF 789
++FF + FFF FFF F F F
Sbjct: 60 WWFFIKMRYLSFFFEFFFLFSFAFAFDF 87
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.295 0.115 0.268
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,949
Number of Sequences: 5004
Number of extensions: 4229
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 707435368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 17 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 44 (21.9 bits)
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