Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C23
         (886 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc...    27   4.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    26   6.2  
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch...    26   6.2  
SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces pomb...    26   8.2  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    26   8.2  

>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 762

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -1

Query: 439 LGRALDVLPRLFQSLLGLAVRVSERXPGDSW 347
           +G  +  L RLF SL GL    ++  PG+ W
Sbjct: 410 VGTVIQGLSRLFSSLYGLRFVPADISPGEVW 440


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/84 (23%), Positives = 34/84 (40%)
 Frame = +2

Query: 38  LKTFDTLLCVAVRFASPPHSVSRTVHHGRQVRSSLRLHRSGPRSDGATRRSRLLQGHRTP 217
           LK FDT++ VA+         S T+H    +   L +     RS+   + S+     ++ 
Sbjct: 360 LKVFDTVMPVALSPKPAQKPPSPTIHTKAALADILDIFNQPLRSESLEKSSKSPISAQSS 419

Query: 218 HQGVP*XFXNNSLTRSPSQRTHRT 289
           + G P     NS     +  T R+
Sbjct: 420 YLGTPLKNDENSSNSGATSLTGRS 443


>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = +2

Query: 101 SRTVHHGRQVRSSLRLHRSGPRSDGATRRSR 193
           SRT+HHG +V+  ++ ++ G  S  ++R ++
Sbjct: 129 SRTIHHGNRVQKKIK-NKHGKNSSKSSRAAQ 158


>SPBC30D10.07c |||biotin-protein ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 631

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 416 ASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQAL 294
           AST+ K PWP  + L  +P     + +  CS+ +E  ++ +
Sbjct: 38  ASTLEKEPWPASTALLVMPG---GRDMGYCSSFNETIYRKI 75


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 209 DVLEEVGSVASHHRSLGQSDAGEENYELGGHDVLSERLSAEE 84
           D+L + G+  S   + GQ    E++YE    D      SAE+
Sbjct: 824 DILSQFGNDKSFGNAAGQDVIEEDDYETDQQDASISNKSAED 865


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,308,328
Number of Sequences: 5004
Number of extensions: 34432
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)