Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C23
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0415 - 13661745-13664240,13664376-13664401,13665018-136650...    32   0.70 
01_01_0401 + 3043634-3043894,3045610-3045849                           31   1.6  
03_05_0373 + 23581812-23583293                                         30   2.1  
07_03_0762 + 21324550-21325414,21325606-21325746,21325993-213261...    30   2.8  
08_02_1579 + 27997714-27998199,27998718-27998789,27999073-279991...    28   8.7  
01_01_0933 - 7368672-7368785,7368860-7368895,7369581-7369715,736...    28   8.7  

>05_03_0415 -
           13661745-13664240,13664376-13664401,13665018-13665035,
           13665914-13666181,13666531-13666598,13667102-13667243
          Length = 1005

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = -3

Query: 434 PCARCSASTVPKPPWPCRSRLRALPWRLLAKALSCCSTDSEPSFQALLKSCAS 276
           P  R SA T+    WP    L A+ +R L  AL+CC + S PS    L++C S
Sbjct: 99  PGLRASAPTLR---WPFPRLLDAIAFRPLPCALACCGS-SAPSVVRHLRACGS 147


>01_01_0401 + 3043634-3043894,3045610-3045849
          Length = 166

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 7/75 (9%)
 Frame = -3

Query: 485 GGGVLLDVQGGPCGAPRPCARCSASTVP----KP---PWPCRSRLRALPWRLLAKALSCC 327
           GGG    +   P  +P   A+C A  VP    +P   P P R    +     L +    C
Sbjct: 23  GGGGGKKLHQSPPPSPPEAAKCCADGVPVVMGEPLGAPAPPRESWNSGVLSCLGRNDEFC 82

Query: 326 STDSEPSFQALLKSC 282
           S+D E SF+A  K C
Sbjct: 83  SSDVEGSFEAFTKQC 97


>03_05_0373 + 23581812-23583293
          Length = 493

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 467 DVQGGPCGAPRPCARCSASTVPKPPW 390
           D  GG   A    +RCSAST PK PW
Sbjct: 53  DGAGGYGSAASSPSRCSASTPPKSPW 78


>07_03_0762 +
           21324550-21325414,21325606-21325746,21325993-21326177,
           21326200-21326410,21326526-21326769,21326853-21327003,
           21327089-21327439
          Length = 715

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 93  CGGDANRTATQRSVSKVLRNVPR 25
           C GDAN +A +R V+  LR+ PR
Sbjct: 96  CRGDANASACERCVAAALRDAPR 118


>08_02_1579 +
           27997714-27998199,27998718-27998789,27999073-27999120,
           27999203-27999357,27999477-27999671,27999743-27999854,
           27999955-28000024,28000110-28000168,28000251-28000374,
           28000465-28000535,28001053-28001154,28001242-28001322,
           28001504-28001662,28001757-28001807
          Length = 594

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = -3

Query: 260 ELNCCX*XLMELLGVVFDVLEEVGSVASHHRSLGQSDAGEENYELGGHDVLSERLSAEEM 81
           E N C   L+ L   V D + E G VA    ++G SDA         + + S  L A+ +
Sbjct: 82  EGNTCNMHLLRLAEAVRDGVREAGMVAFRFNTVGVSDAISMGTRGMCYSLQSRDLIADSI 141

Query: 80  RT--GLQH 63
            T  G QH
Sbjct: 142 ETVMGAQH 149


>01_01_0933 -
           7368672-7368785,7368860-7368895,7369581-7369715,
           7369825-7369989,7370060-7370140,7370316-7370391,
           7370479-7370612,7370706-7370798,7371860-7372188,
           7372290-7372350,7372407-7372778
          Length = 531

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = -3

Query: 452 PCGAPRPCARCSASTVPKPPWPCRSRLRALPWRLLAKALSC 330
           PC  P P  R  ++T  + PW    R R + W  L     C
Sbjct: 26  PCTTPAPRMRSLSATTTRRPWRTGWRGRPMRWASLVVMKLC 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,504,526
Number of Sequences: 37544
Number of extensions: 289495
Number of successful extensions: 1295
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)