Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C21
         (924 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    37   0.005
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    36   0.011
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    32   0.13 
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    31   0.23 
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    31   0.30 
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    31   0.30 

>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 36.7 bits (81), Expect = 0.005
 Identities = 28/107 (26%), Positives = 44/107 (41%)
 Frame = +1

Query: 172 FTLXVLGGXTXPAAADVXXILSSXXIEADGXKLKKANH*AQRQGCGTXXLRPXVRSCRQC 351
           + L  +GG   P+A+D+  +LS+  IEA+  +++   +  +  G     L       +  
Sbjct: 7   YLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLIN--ELNGKDIDELIAAGNE-KLA 63

Query: 352 QVGGGXXXXXXXXXXXXXXXDEXKXXNKEEKKXDSXSDXDMGFGLXD 492
            V  G                  +   KEE K +  SD DMGFGL D
Sbjct: 64  TVPTGGAASAAPAAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 35.5 bits (78), Expect = 0.011
 Identities = 27/107 (25%), Positives = 43/107 (40%)
 Frame = +1

Query: 172 FTLXVLGGXTXPAAADVXXILSSXXIEADGXKLKKANH*AQRQGCGTXXLRPXVRSCRQC 351
           + L  +GG   P+A+D+  +LS+  IE++  +++      +  G     L       +  
Sbjct: 7   YLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIK--ELDGKDIDELIAAGNE-KLA 63

Query: 352 QVGGGXXXXXXXXXXXXXXXDEXKXXNKEEKKXDSXSDXDMGFGLXD 492
            V  G                  +   KEE K +  SD DMGFGL D
Sbjct: 64  TVPSGGAAAAAAPAAAGGAAPAAEEAAKEEAKEEEESDEDMGFGLFD 110


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 26/107 (24%), Positives = 41/107 (38%)
 Frame = +1

Query: 172 FTLXVLGGXTXPAAADVXXILSSXXIEADGXKLKKANH*AQRQGCGTXXLRPXVRSCRQC 351
           + L  +GG   P+A+D+  +LS+  IEA+  +++     ++  G     L          
Sbjct: 7   YLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLI--SELNGKNIEELIAAGNEKLST 64

Query: 352 QVGGGXXXXXXXXXXXXXXXDEXKXXNKEEKKXDSXSDXDMGFGLXD 492
               G                      KEE+  +  SD DMGFGL D
Sbjct: 65  VPSAGAVATPAAGGAAGAEATSAAEEAKEEEAAEE-SDEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +1

Query: 415 EXKXXNKEEKKXDSXSDXDMGFGLXD 492
           E     KEE K +  SD DMGFGL D
Sbjct: 84  EAPAEEKEEAKEEEESDEDMGFGLFD 109


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 433 KEEKKXDSXSDXDMGFGLXD 492
           KEE K +  SD DMGFGL D
Sbjct: 91  KEEAKEEEESDEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +1

Query: 433 KEEKKXDSXSDXDMGFGLXD 492
           KEE K +  SD DMGFGL D
Sbjct: 90  KEEAKEEEESDEDMGFGLFD 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,948,698
Number of Sequences: 5004
Number of extensions: 19270
Number of successful extensions: 29
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)