Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C20
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal pr...    53   2e-07
Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical pr...    33   0.30 
Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AF040654-3|AAK21451.2|  445|Caenorhabditis elegans Hypothetical ...    28   8.4  

>AF003151-13|AAK18907.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 24.1 protein.
          Length = 159

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 22/46 (47%), Positives = 29/46 (63%)
 Frame = +3

Query: 30  MQIGLCAYSGYKIYPGHGKNMVKVDGKPSHFLNSKCEAAHLMXRXP 167
           M++  C YSGYKI+PGHGK +V+ DGK   FL+ K      + R P
Sbjct: 1   MKVETCVYSGYKIHPGHGKRLVRTDGKVQIFLSGKALKGAKLRRNP 46


>Z75525-5|CAA99764.1|  162|Caenorhabditis elegans Hypothetical
           protein C03D6.8 protein.
          Length = 162

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = +3

Query: 30  MQIGLCAYSGYKIYPGHGKNMVKVDGKPSHFLNSKCEAAHLMXRXP 167
           M+I  C +    IYPGHG   V+ D     F  S+C       + P
Sbjct: 1   MRIEKCYFCSSPIYPGHGIQFVRNDSTVFKFCRSRCNKLFKKKKNP 46


>Z27078-7|CAE52901.2| 1502|Caenorhabditis elegans Hypothetical
           protein K04H4.1b protein.
          Length = 1502

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 15  FXQVKMQIGLCAYSGYKIYPGHGKNMVKVDGKP 113
           F  +   IG   YSG K +PG G N V  DG P
Sbjct: 474 FPGIPGDIGDPGYSGEKGFPGTGVNKVGPDGYP 506


>AF040654-3|AAK21451.2|  445|Caenorhabditis elegans Hypothetical
           protein R06B10.5 protein.
          Length = 445

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = +1

Query: 1   RFSFCXLRSKCRSDFAPIVDTKYIQAMARTWLKWMEN 111
           RF F  +++KC +   P +D+K ++   + W++ ++N
Sbjct: 122 RFGFFTIQNKCST---PPIDSKILRRREKKWIQMLDN 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,257,920
Number of Sequences: 27780
Number of extensions: 114169
Number of successful extensions: 256
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)