Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C19
         (888 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1294 - 29080347-29081447                                         29   6.5  
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    28   8.6  

>06_03_1294 - 29080347-29081447
          Length = 366

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 56  CXCSLPAPWLSXSARXXPSPLLWWASAS 139
           C CS P+P  S S+   P    WW  AS
Sbjct: 99  CRCSAPSPVASSSSTSTPMGSHWWWPAS 126


>12_02_0134 -
           14071190-14071435,14071800-14071988,14072114-14072194,
           14072261-14072404,14072528-14072761,14072836-14073981,
           14074863-14074922,14075178-14075420,14075509-14075607,
           14076196-14076367,14076597-14076735,14077514-14077624,
           14077695-14077797,14077885-14077962,14078054-14078122,
           14078203-14078275,14078891-14078975,14079473-14079536,
           14079963-14080073,14080139-14080213,14080306-14080398,
           14080982-14081056,14081172-14081261
          Length = 1259

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 529 NGSXLFYAVTNXNXXYXVTENGNXYVLDDNLKAVKQLCLITSMYCTM 669
           +GS +    TN    Y    NG    +  +L+ + + CL+ + +C M
Sbjct: 549 SGSDIVSGSTNMVAVYHCLHNGLESAIHASLQLISRACLLDASFCAM 595


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,894,589
Number of Sequences: 37544
Number of extensions: 177045
Number of successful extensions: 357
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)