Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C13
         (939 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0093 + 727977-729854,729877-729930                               29   5.3  
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    28   9.3  
03_04_0004 + 16234648-16234731,16235178-16235237,16235598-162356...    28   9.3  
03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    28   9.3  

>01_01_0093 + 727977-729854,729877-729930
          Length = 643

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 641 IFVTXIFSSTSILINILGYTSYGAGTXKTVAIRALDNSDVEGIQELTLXEMHTRXT 474
           I +  +  STS+L  ++ YTS    T +   IR     + + ++E+TL  M  R T
Sbjct: 273 IIIASVIGSTSVLTMVMAYTSIKRRTRRRREIR----EEEQELEEITLQGMPRRFT 324


>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 432 FYXAXDFETXYKSACXARVHLXQGQFLYAF-YIAVIQRPDCHGFRCS 569
           F      ET + +AC  R HL QG+ + A+ Y+   +  DC GF  S
Sbjct: 420 FELLISLETFFTTACMGRGHLCQGKLVDAYRYLHKEKDMDC-GFSWS 465


>03_04_0004 +
           16234648-16234731,16235178-16235237,16235598-16235627,
           16235859-16235909,16235978-16236076,16236410-16236469,
           16236534-16236623,16237011-16237112,16237195-16237305,
           16237952-16238068,16238153-16238233,16239089-16239169,
           16239798-16239875,16239949-16240088,16240205-16240304,
           16240836-16240954,16241152-16241287,16241371-16241501,
           16242222-16242298,16242451-16242562,16242638-16242693,
           16243724-16243839,16245538-16245622,16245703-16245806,
           16246469-16246597,16246888-16246938
          Length = 799

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 614 TSILINILGYTSYGAGTXKTVAIRALDNSDVE 519
           T+  I ++GY   GAG   TVA+ +    D+E
Sbjct: 342 TTKTIELVGYDKLGAGQNATVAVMSYSGYDIE 373


>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 14/25 (56%), Positives = 14/25 (56%)
 Frame = +2

Query: 470 CLFXACASXSRSILVCLLHRCYPAP 544
           CLF      SR ILVC L RC  AP
Sbjct: 58  CLFCEANFISRRILVCDLLRCLVAP 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,593
Number of Sequences: 37544
Number of extensions: 215980
Number of successful extensions: 334
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2694390200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)