Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C09
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    31   0.22 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   4.7  

>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 651 SCHVREKGTIPWSGHAFSTGGPARHKIEHRDV 746
           S H    G + W+ H  S+GG   H I HRDV
Sbjct: 330 SGHTERVGALSWNDHVLSSGGRDNH-ILHRDV 360


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -1

Query: 354 APPTCTCM*RPVLLPAFTHSSITFFLSATFRDICSPVVPPTSTHLKPAS 208
           APPT        ++P  TH + T  +  T     + VVPPT TH    S
Sbjct: 109 APPTTHVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPT-THANTTS 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,691,633
Number of Sequences: 5004
Number of extensions: 80367
Number of successful extensions: 210
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)