Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C09
         (888 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL008866-1|CAA15509.3|  724|Caenorhabditis elegans Hypothetical ...    29   5.9  
AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily a...    28   7.8  

>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
            F46C3.3 protein.
          Length = 2557

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 324  VFTYRYKSVVHHSPXVQELAAFCQKNGVGSILTLPELYFKPSNVDELVS 470
            V  YR KSVV +   + E+     K+G+  +    +  FK  N D++VS
Sbjct: 2452 VLHYRLKSVVENGHQLPEVILTINKSGIQLLQPKSKEVFKERNYDQIVS 2500


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
 Frame = -1

Query: 402 HFFDRTPPIPARXGSGAPPTCTCM*RPVLLPAFTHSSITFFLSATFRDICSPVVPPTSTH 223
           +FF   PP PA   S  PP  +    P+     T SS T+  S+ + +   P  PP    
Sbjct: 331 YFFQAPPPAPASSSSTVPPAVSPFGVPLGAQPSTTSSTTY--SSNYSNPSYP--PPPKVD 386

Query: 222 LKPASAMYL---AYPGIA 178
           L P   + L    YP ++
Sbjct: 387 LPPPGIVQLDRVVYPPVS 404


>AL008866-1|CAA15509.3|  724|Caenorhabditis elegans Hypothetical
           protein B0019.1 protein.
          Length = 724

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 253 AYVSKRSGQEESYRRMGESGKEHWSSHTGTSRWCTT 360
           AY    S Q  ++R  G SGK  ++S TG   W TT
Sbjct: 319 AYYFTMSFQRATWRLNGRSGKVIYTSATGPLVWLTT 354


>AF067617-5|AAC17559.1| 2957|Caenorhabditis elegans Temporarily
            assigned gene nameprotein 192 protein.
          Length = 2957

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 22/78 (28%), Positives = 31/78 (39%)
 Frame = +1

Query: 532  SMTRVEINMPAFVTEASKKIPNFAGIKFTSNDLSEASQVLRAMSEKKALFLGADTLLAPA 711
            S +  + N  A    A+  +   A     S   ++A  V +     +AL   +    A A
Sbjct: 2391 SQSSAQANQAAQAQAAAVALAQVAAAASASTSSADAQAVAQQQQVLEALLAMSMNPAALA 2450

Query: 712  ALLGIKSSIGTSFNLFPK 765
            AL G  SS GTS    PK
Sbjct: 2451 ALTGTSSSTGTSTPSAPK 2468


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,963,072
Number of Sequences: 27780
Number of extensions: 477884
Number of successful extensions: 1202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)