Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C01
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...   122   9e-29
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po...    29   1.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   6.2  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   6.2  
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.2  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   8.2  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   8.2  

>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score =  122 bits (293), Expect = 9e-29
 Identities = 72/213 (33%), Positives = 117/213 (54%), Gaps = 1/213 (0%)
 Frame = +3

Query: 129 NIFLNKI-MSALKGNLLVRSLSTSVASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 305
           +IF   I ++A   +L +RSL+T+ ASA    PPVQ++GL+G YAS+L++AA K   LD 
Sbjct: 3   HIFRRSIPITARLPSLGIRSLATATASAH---PPVQLYGLDGSYASSLYTAAVKESKLDN 59

Query: 306 XEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 485
            EK L +    ++   + +++I +P + R  K   +  +       P   N   +L +N 
Sbjct: 60  VEKALNKLSGVLQQRPEFEQYISSPWLTREDKKILVSSLTQMTGNEPLLKNFYNVLLDNH 119

Query: 486 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALXKFLKGNETVQLTAK 665
           RL  L  +   F  +M A RGE+  ++ +A PLD      LE+ + K   G   + ++ K
Sbjct: 120 RLYLLTRIQKQFSTLMRAKRGEIEVKITSATPLDSKILSRLESRIAKSKYGKGKLLVSNK 179

Query: 666 VDPSLIGGMVVSIGD*YVDMSVASKVKKYTXLI 764
           V PS+IGG++V IGD  +D+SV S++     L+
Sbjct: 180 VTPSIIGGLIVEIGDNILDVSVGSRLNNLNKLL 212


>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 467

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 581 WFGCNNFTSYFTPVRSHHNLKSINDSLQFPQATI 480
           W G  +F + F  + +H  + S+N  L F QA I
Sbjct: 261 WLGPEHFLNEFFTLNTHQKVSSLNYHLAFQQARI 294


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 418  CFNASTFMLLFIVGLMMNSLSF-ASVLID 335
            C     F+LL   GL+MN L+F ASV+++
Sbjct: 1296 CITRVYFLLLKACGLIMNGLNFEASVMLE 1324


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 523 LKALMTASSFPKRPFSASNPSRLPVVG 443
           L   +T  + P++PFS S+P+  P +G
Sbjct: 233 LNQALTLINLPEQPFSISSPTATPQLG 259


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -3

Query: 484 PFSASNPSRLPVVGERLILLATCFNASTFML 392
           PFS    S+LPV G   ILL   F  +T+++
Sbjct: 3   PFSFDPSSKLPVTGIYNILLFNLFPLATYLV 33


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -3

Query: 466 PSRLPVVGERLILLATCFNASTFMLLFIVGLMMNSLSFASV 344
           P + P      ++   CF A  F+++FI  +    LSF +V
Sbjct: 188 PLKRPNTSISNVIWLICFGAPLFLVIFICYIFFTVLSFFNV 228


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +3

Query: 405 DALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVAC 560
           +AL    N+I  + T  + LGL+    RL  +         +MA H G + C
Sbjct: 5   EALHVGCNRIPTAATWSSNLGLIYGAERLIAVADPFKEINYLMAGHSGRINC 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,120,889
Number of Sequences: 5004
Number of extensions: 64070
Number of successful extensions: 174
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)