Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C01
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257...   111   9e-25
02_05_0759 + 31545473-31546204                                         71   2e-12
07_03_1116 - 24084162-24084201,24084481-24084570,24084640-240852...    31   1.6  
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304...    29   3.8  
03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499     29   6.6  
03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423     28   8.7  

>06_03_0928 +
           26024589-26024645,26024900-26024956,26025464-26025707,
           26026126-26026238,26026675-26026761,26026843-26026962
          Length = 225

 Score =  111 bits (266), Expect = 9e-25
 Identities = 60/192 (31%), Positives = 103/192 (53%), Gaps = 2/192 (1%)
 Frame = +3

Query: 180 RSLSTSVA--SAQMVKPPVQVFGLEGRYASALFSAASKTKALDIXEKELCQFQQSIKTDA 353
           R  ++ VA  + + +K P  ++G  G YASALF  A+K   LD  E E+    ++ K   
Sbjct: 23  RGFASQVAKPTGKDIKVPEALYGGTGNYASALFLTAAKANLLDKVETEIRDVVEASKKSP 82

Query: 354 KLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFKIMM 533
              +FI + ++ +  +V A+  +  +   S  T N L +LA+NGRL  ++ +   F  + 
Sbjct: 83  LFSQFIKDLSVPKETRVKAITEIFAEAGFSDVTKNFLAVLADNGRLKHIDRIAERFVDLT 142

Query: 534 AAHRGEVACEVVTAKPLDQAQRQNLEAALXKFLKGNETVQLTAKVDPSLIGGMVVSIGD* 713
            AH+GEV   V T  PL + + + L+  L   L  N+T+ +  K+D S++GG+V+  G  
Sbjct: 143 MAHKGEVKVLVRTVIPLPEKEEKELKETLQDILGKNKTILIEQKIDYSIMGGLVIQFGQK 202

Query: 714 YVDMSVASKVKK 749
             DMS+ ++ K+
Sbjct: 203 VFDMSIKTRAKQ 214


>02_05_0759 + 31545473-31546204
          Length = 243

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 5/172 (2%)
 Frame = +3

Query: 255 YASALFSAASKTKALDIXEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKI 434
           YA+AL   AS+   L+    +L + ++    +A + EF  NPT+ R  K   +  +A   
Sbjct: 64  YATALSEVASENGTLEATVSDLEKLEKIFAEEA-IAEFFDNPTVPRDEKAQLIDEIAKSS 122

Query: 435 SLSPTTGNLLGLLAENGRLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLE- 611
            L     N L ++ +NGR G +  ++  F+    A       EV T   + Q + Q+L  
Sbjct: 123 ELQAHVVNFLNVVVDNGRAGLMTQIVREFE---NAFNSLTGTEVATVTSVVQLESQDLAQ 179

Query: 612 -AALXKFLKGNETVQLTAKVDPSLIGGMVVSI---GD*YVDMSVASKVKKYT 755
            A   + L G + V++  ++DP LI G  +     G   +DMSV  ++++ T
Sbjct: 180 IAQQVQNLTGAKNVRVKTRIDPELIAGFTIQYGRDGSSLIDMSVRKQIEEIT 231


>07_03_1116 -
           24084162-24084201,24084481-24084570,24084640-24085220,
           24085653-24085822,24086006-24087074
          Length = 649

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 41/147 (27%), Positives = 56/147 (38%), Gaps = 14/147 (9%)
 Frame = +3

Query: 243 LEGRYASALFSAASKTKALDIXEKELCQF--QQSIKTDAKLKEFIINPTIKRSMKVDALK 416
           LE  Y S     A K KAL+  + E C+   ++     AK + F+      R   V AL 
Sbjct: 56  LEKSYKSKCDELAEKQKALEEKKAESCRLIAEKEANVSAKERAFLNQFQELRDTAVSALS 115

Query: 417 HVANKISLSPTTGNLLGLLAENG-RLGKLEAVINAFKIMMAAHRGEVAC---EVVTAKPL 584
            V  K  +      L G+L  NG +  K+    N    + A+     A    E   A P+
Sbjct: 116 EVRQKYKV-----ELAGILDANGSKDKKVRTSTNDMNALCASEENTTASGLGEPSEASPV 170

Query: 585 DQAQRQNLE--------AALXKFLKGN 641
           D   R  L+        A L KFL  N
Sbjct: 171 DVKPRPVLKQLCEQMDTAGLLKFLSEN 197


>08_01_0344 +
           3043824-3044123,3044260-3044314,3044810-3044985,
           3045083-3045283,3045383-3045642,3045909-3046222,
           3046399-3046622,3047046-3047398,3047709-3047826,
           3047875-3048133,3048252-3049729
          Length = 1245

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/64 (26%), Positives = 31/64 (48%)
 Frame = +3

Query: 582 LDQAQRQNLEAALXKFLKGNETVQLTAKVDPSLIGGMVVSIGD*YVDMSVASKVKKYTXL 761
           L+  Q +  +  + K L G+ +  ++    P L G  +++IG  Y D+    KV KY+ +
Sbjct: 659 LNSKQPKQEKDDIAKILLGSSSAAISGISKP-LFGYFIMTIGVAYYDLDAKRKVSKYSLI 717

Query: 762 IXAA 773
              A
Sbjct: 718 FFTA 721


>03_05_1080 + 30229828-30230707,30230861-30231110,30231265-30231499
          Length = 454

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 538 AAIIILKALMTASSFPKRPFSASNPSRLPVVG 443
           AA+ +L+    A++  +RP +   P RLPV+G
Sbjct: 15  AAVALLQLAKVAATMRRRPRTPPGPWRLPVIG 46


>03_05_1054 + 29992101-29993032,29995378-29995401,29996790-29997423
          Length = 529

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
 Frame = +3

Query: 564 VVTAKPLDQAQRQNLEAALXKFLKGNETVQLTAKVDPSLIGGMVVSIG---D*YVDMSVA 734
           V +A  LD A++  L A   + + G  ++ +   VDPSLI G VV  G      +D+SV 
Sbjct: 449 VSSAVELD-ARQTELIARKMRRITGFASLTIENVVDPSLIAGFVVCYGPGESHVIDLSVK 507

Query: 735 SKV 743
            K+
Sbjct: 508 GKL 510


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,125,766
Number of Sequences: 37544
Number of extensions: 406490
Number of successful extensions: 907
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 907
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)