Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_C01
         (885 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase su...   188   5e-48
U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase su...   186   2e-47

>U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform b protein.
          Length = 228

 Score =  188 bits (458), Expect = 5e-48
 Identities = 93/217 (42%), Positives = 144/217 (66%), Gaps = 2/217 (0%)
 Frame = +3

Query: 132 IFLNKIMSALKGNLLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDI 305
           ++L  +   +   L+ R  STS  +A AQ+VK P+QV G+EGRYA+AL+SA  K   LD 
Sbjct: 12  LYLTILHEKVMAQLMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQ 71

Query: 306 XEKELCQFQQSIKTDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENG 485
              +L   +   K + K +EF+++PT+K + K  A++ ++ K+ L+  TGN LGLLAENG
Sbjct: 72  ISTDLNNVRSVYKDNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENG 131

Query: 486 RLGKLEAVINAFKIMMAAHRGEVACEVVTAKPLDQAQRQNLEAALXKFLKGNETVQLTAK 665
           RL KLE+V+++F+ +M AHRGE+  +V +A+ L  + ++ L  AL K  K  + + +T  
Sbjct: 132 RLNKLESVVSSFESIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYA 191

Query: 666 VDPSLIGGMVVSIGD*YVDMSVASKVKKYTXLIXAAV 776
           V PS++GG+VV+IGD YVD+S+AS+VKKY   +  A+
Sbjct: 192 VKPSILGGLVVTIGDKYVDLSIASRVKKYKDALATAI 228


>U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform a protein.
          Length = 207

 Score =  186 bits (453), Expect = 2e-47
 Identities = 92/204 (45%), Positives = 139/204 (68%), Gaps = 2/204 (0%)
 Frame = +3

Query: 171 LLVRSLSTS--VASAQMVKPPVQVFGLEGRYASALFSAASKTKALDIXEKELCQFQQSIK 344
           L+ R  STS  +A AQ+VK P+QV G+EGRYA+AL+SA  K   LD    +L   +   K
Sbjct: 4   LMKRGFSTSAALAKAQLVKTPIQVHGVEGRYAAALYSAGHKQNKLDQISTDLNNVRSVYK 63

Query: 345 TDAKLKEFIINPTIKRSMKVDALKHVANKISLSPTTGNLLGLLAENGRLGKLEAVINAFK 524
            + K +EF+++PT+K + K  A++ ++ K+ L+  TGN LGLLAENGRL KLE+V+++F+
Sbjct: 64  DNKKFQEFVLDPTLKANKKKTAIEAISTKLGLTKETGNFLGLLAENGRLNKLESVVSSFE 123

Query: 525 IMMAAHRGEVACEVVTAKPLDQAQRQNLEAALXKFLKGNETVQLTAKVDPSLIGGMVVSI 704
            +M AHRGE+  +V +A+ L  + ++ L  AL K  K  + + +T  V PS++GG+VV+I
Sbjct: 124 SIMRAHRGELFVQVTSAEELSSSNQKALSDALSKIGKSGQKLTVTYAVKPSILGGLVVTI 183

Query: 705 GD*YVDMSVASKVKKYTXLIXAAV 776
           GD YVD+S+AS+VKKY   +  A+
Sbjct: 184 GDKYVDLSIASRVKKYKDALATAI 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,338,957
Number of Sequences: 27780
Number of extensions: 364202
Number of successful extensions: 987
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)