Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP24_F_B19
(856 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic in... 120 1e-27
Z30662-2|CAA83135.1| 181|Caenorhabditis elegans Hypothetical pr... 33 0.34
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr... 31 1.0
U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical pr... 29 4.2
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 29 5.6
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 29 5.6
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 29 5.6
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 29 5.6
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 29 5.6
Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical pr... 28 7.4
AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA... 28 7.4
CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical ... 28 9.7
>AF067608-8|AAC17647.1| 432|Caenorhabditis elegans Eukaryotic
initiation factor protein3.E protein.
Length = 432
Score = 120 bits (289), Expect = 1e-27
Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 4/223 (1%)
Frame = +2
Query: 149 SKFDLTFKIGQYLDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRML 328
S FDLT ++ +LD HL+ PLLEF+ + YD+ L + ++L+KTNMID V +
Sbjct: 2 STFDLTQRMAPFLDLHLIIPLLEFIEPRGIYDEKSLTEMHRQLLTKTNMIDSVIE----T 57
Query: 329 YPEEDTPEEIIQRRGVVLSELQELQDAVEPVLRLMQRDDVMKTIETMRDPK---TLINHL 499
Y + P I ++ ++ E EL+ V+ V+ +++ +V + ++ R+ ++ HL
Sbjct: 58 YNGKPIPAAIEAKKKQIIKERDELKSKVDSVVAILEIPEVKEMMDNNRERDGNVRILEHL 117
Query: 500 STNKEYEFKIEMIDSMYRLAKYRYECGNY-VESASYLYFCQLXDVAN*QELFVGSLG*LA 676
+ N + F ++M+D++++ +K+ YECGNY V S Y+ L + A+ G LA
Sbjct: 118 TQN--HNFTVDMVDTLFKYSKFMYECGNYTVASVCLYYYRNLVNQAD-PNYLNALYGKLA 174
Query: 677 SEILVQNWDGALDDLTNFESSSITVEPVHXQQHASPTARTWLV 805
SEIL+Q W+ A DDL + I P + T R WL+
Sbjct: 175 SEILLQEWEHARDDLLKLR-AYIDANPFDTEWEL-VTQRAWLM 215
>Z30662-2|CAA83135.1| 181|Caenorhabditis elegans Hypothetical
protein T16H12.2 protein.
Length = 181
Score = 32.7 bits (71), Expect = 0.34
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = +2
Query: 266 KLEILSKTNMIDYVTDIRRMLYPEEDTPEEIIQRRGVVLSELQELQDAVEP 418
K I+ +T +V + +LYP++DTP +I++ R L Q+ +D EP
Sbjct: 110 KHHIVCRTCQQSHVKAVCPILYPKKDTPPKILRARRRSLIRAQKKKDFQEP 160
>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
presynaptic morphologyprotein 1 protein.
Length = 3766
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/77 (23%), Positives = 38/77 (49%)
Frame = -1
Query: 541 IDHFNFKLILLVCRKMVYKSFRIPHGFNCFHYIISLHESQYWLYCILKFLQFRKNYTSPL 362
++H + K I C + V ++ H F +++++ + S+Y + I+ LQ+ TS
Sbjct: 2727 VEHHDLKRIKSACVQSVRRAVAFSHAFRVWNWLLRMVSSEYSVSDII--LQYLTTLTS-- 2782
Query: 361 YNFFRSVFFRIEHSSDV 311
YN F + +S++
Sbjct: 2783 YNRLAEYMFSAKKNSNI 2799
>U39652-2|AAA80404.1| 817|Caenorhabditis elegans Hypothetical
protein R07E4.5 protein.
Length = 817
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 185 LDRHLVFPLLEFLAAKETYDQSELLQAKLEILSKTNMIDYVTDIRRMLYPEEDTP 349
L R ++ L EF +TY E L+AKLE + + + ++ PE+D+P
Sbjct: 408 LRRPVILRLREFDKDDKTYYDEETLKAKLEEHAVKKLEEEKDKLQSAAAPEDDSP 462
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 671 ITPKNRQIILVSWRHXPVDKSKDMMLTPHNFHIHSD 564
+T KNRQ W + + D+++ P +F HSD
Sbjct: 892 LTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSD 927
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 671 ITPKNRQIILVSWRHXPVDKSKDMMLTPHNFHIHSD 564
+T KNRQ W + + D+++ P +F HSD
Sbjct: 892 LTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSD 927
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 671 ITPKNRQIILVSWRHXPVDKSKDMMLTPHNFHIHSD 564
+T KNRQ W + + D+++ P +F HSD
Sbjct: 927 LTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSD 962
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 671 ITPKNRQIILVSWRHXPVDKSKDMMLTPHNFHIHSD 564
+T KNRQ W + + D+++ P +F HSD
Sbjct: 892 LTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSD 927
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 671 ITPKNRQIILVSWRHXPVDKSKDMMLTPHNFHIHSD 564
+T KNRQ W + + D+++ P +F HSD
Sbjct: 892 LTEKNRQQCAKYWPDEQITRYGDIIVEPASFSFHSD 927
>Z82073-6|CAB04924.1| 333|Caenorhabditis elegans Hypothetical
protein W06D12.3 protein.
Length = 333
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 236 TYDQSELLQAKLEILSKTN-MIDYVTDIRRMLYPEEDTPEEIIQRR 370
T+ Q E L+ T +ID+ I M+Y + TPEE+IQR+
Sbjct: 271 TFPQDYRTSEHAEFLNWTRVLIDFGASIG-MVYDRKTTPEEVIQRQ 315
>AF260242-1|AAF97548.1| 333|Caenorhabditis elegans palmitoyl-CoA
fatty acid desaturaseFAT-5 protein.
Length = 333
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 236 TYDQSELLQAKLEILSKTN-MIDYVTDIRRMLYPEEDTPEEIIQRR 370
T+ Q E L+ T +ID+ I M+Y + TPEE+IQR+
Sbjct: 271 TFPQDYRTSEHAEFLNWTRVLIDFGASIG-MVYDRKTTPEEVIQRQ 315
>CU457741-7|CAM36348.1| 710|Caenorhabditis elegans Hypothetical
protein C42C1.7 protein.
Length = 710
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 424 QYWLYCILKFLQFRKNYTSPLYNFFRSVFFRIEHSSDVSNIIYHVSFAQN 275
++ YC+L + +TSP F SVF RI + I+Y + F ++
Sbjct: 170 KFGYYCLLGVISISYYFTSPQTTAFNSVFARIWQFL-IGMIVYLIYFKKS 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,725,573
Number of Sequences: 27780
Number of extensions: 357892
Number of successful extensions: 966
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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