Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_B16
         (890 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0186 - 6243487-6243799,6243892-6244400,6244495-6244557,624...    32   0.70 
12_01_1025 - 10506144-10506226,10506643-10506699,10507502-105076...    28   8.7  
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85...    28   8.7  
07_03_1528 + 27474973-27475289,27476890-27477073,27477081-274772...    28   8.7  

>03_02_0186 -
           6243487-6243799,6243892-6244400,6244495-6244557,
           6245482-6245681,6246125-6246519,6246776-6246888
          Length = 530

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +2

Query: 461 CLFCACASQSRSILVCLLHRCYPAPXI 541
           CLFC     SR ILVC L RC  AP +
Sbjct: 58  CLFCEANFISRRILVCDLLRCLVAPSL 84


>12_01_1025 -
           10506144-10506226,10506643-10506699,10507502-10507605,
           10507884-10507937,10508107-10508193,10509027-10509214,
           10509793-10509854,10510084-10510354,10510756-10510834,
           10511715-10511913,10512816-10512960,10513324-10513416,
           10514449-10514736
          Length = 569

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 444 ETFYKSACFARVHLNQGQFLYAF 512
           ETF+ +AC  R HL QG+ + A+
Sbjct: 427 ETFFTTACMGRGHLCQGKLVDAY 449


>11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-852260,
            852330-852409,852506-852848,853068-853166,853240-853360,
            853567-853723,853976-854099,855275-855368,855866-857259,
            857882-857924,858240-858458,859379-859605,859701-859948,
            860246-860552,860725-861153
          Length = 1486

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 669  LSCGFRINEAMLHLCYVNFLQHFHIHKHFRVYFIR 565
            L  GFR++ A+ +LC + +L+   I K  R   IR
Sbjct: 1002 LKAGFRLSSALFYLCNILWLRAVKIRKKLRRQGIR 1036


>07_03_1528 +
           27474973-27475289,27476890-27477073,27477081-27477261,
           27477270-27478206,27478384-27479035,27479352-27479798
          Length = 905

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 605 TSIFINILGYTSYGAGTTKPWQXRALDNSDVEGIQELTLIE 483
           T +   I+G+TS+ + T    + + L  S ++ +Q LT IE
Sbjct: 556 TDLIPKIIGFTSFTSATVNSEEQKVLLKSSLKVLQRLTSIE 596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,386,155
Number of Sequences: 37544
Number of extensions: 405406
Number of successful extensions: 890
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2506954360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)