Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_B15
         (907 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    26   7.1  
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111...    28   8.9  

>01_06_0823 + 32234588-32234936,32236354-32237093,32237260-32237343,
            32237909-32239263,32240399-32240460,32240544-32241144,
            32241229-32241310,32241778-32241840
          Length = 1111

 Score = 25.8 bits (54), Expect(2) = 7.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 415  TAFPRGXADXXXQXKPPTPPP 353
            T FP G A    +  PP PPP
Sbjct: 950  TQFPGGSAQQSEKRPPPPPPP 970



 Score = 21.0 bits (42), Expect(2) = 7.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -1

Query: 370  PPTPPPXP 347
            PP+PPP P
Sbjct: 987  PPSPPPLP 994


>05_05_0075 +
           22209322-22210041,22210323-22210391,22210775-22211145,
           22212291-22212351,22212496-22213086
          Length = 603

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 680 PRXDYKDXXRFPLETPSVRPPVPDPAXYGIP 772
           P+   ++  RFP + P+  PP P P  + +P
Sbjct: 40  PQHSRREKLRFPPDHPAESPPPPPPGSWPLP 70


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,165,404
Number of Sequences: 37544
Number of extensions: 237358
Number of successful extensions: 798
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)