Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_A16
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    36   0.010
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    32   0.095
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    28   2.0  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   3.6  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    26   6.2  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   6.2  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 372 NQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDS 551
           NQ+     RE   G  +LHL  E   W  K+ P+ K+ + ++  +   +P+ S +L +DS
Sbjct: 46  NQEAYNWLREQIRGLRNLHLLPEEEQWLRKNCPYLKESFYEFMHEFEFDPENSISLNYDS 105

Query: 552 RVQ 560
             +
Sbjct: 106 ETK 108


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 676 SIQR*TSQGSLRIYECHVGIATSEGKVGSYNE 771
           ++QR  ++ S+ +YE H  IA  +G VG YN+
Sbjct: 193 TVQRIQNEFSVLVYEIHARIALEKGDVGEYNQ 224


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 867 PKRSVICMFLYGHDLYSIXTLFLDSGQDVLAEL-VVRAH 754
           PK+ ++ M  YGH   S+   +LD G DV   + + RAH
Sbjct: 123 PKK-IVAMDPYGHLTPSVFKKYLDEGYDVRPTIAITRAH 160


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 576 NLYRISPWASYVKPHEGFTYQHFIYKPEQPY 668
           +LY + P+A +V P+ G+ YQ+ +Y  E  Y
Sbjct: 26  HLY-VWPFALFVYPYIGYVYQNKLYSEEVRY 55


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 213 LEKLLERDGYLKPYEREIRRRYACY 287
           LEK++++D  L+    E+R++Y C+
Sbjct: 85  LEKVIKKDEVLREMLLELRKKYKCW 109


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 788  CPESRNRVXMLYRSWP*RNMHITLRLGIKXQL 883
            CP    R+ +  R W   + H+ LR+G+  ++
Sbjct: 919  CPSGLTRLWLKERPWVYAHHHVQLRIGLDNEI 950


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,805,412
Number of Sequences: 5004
Number of extensions: 86152
Number of successful extensions: 208
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)