Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_A16
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   4.9  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   8.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   8.6  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +2

Query: 512 CKSRRFVCIETRLPCPNH--SERQL 580
           C + +F C +T  PC  H  S+R L
Sbjct: 93  CSAEKFECSKTSNPCLPHRNSDRDL 117


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 836 MAMICIALXPCFLILGRTFSRN 771
           M  I IAL P   +LG  FS +
Sbjct: 1   MKTILIALVPVCFLLGEVFSED 22


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 836 MAMICIALXPCFLILGRTFSRN 771
           M  I IAL P   +LG  FS +
Sbjct: 1   MKTILIALVPVCFLLGEVFSED 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 257,192
Number of Sequences: 438
Number of extensions: 6420
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)