Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_A15
         (911 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   161   6e-42
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   161   6e-42

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  161 bits (392), Expect = 6e-42
 Identities = 85/146 (58%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
 Frame = +2

Query: 476 PREQGLLSFWRGNFAKVXXYFPTHALXFAFNDEYKXVYLGGVDKKTQFWRYFXXXXXXXX 655
           P+EQG LS+WRGN A V  YFPT AL FAF D+YK V+LGGVDK TQF RYF        
Sbjct: 64  PKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGG 123

Query: 656 XXXXTSLCFVYPLGL-RTYPTCRRCR*GRWPALILRSRKLXXXNFKSDGLIGLYRGSGVS 832
               TSLCFVYPL   RT       + G           L    FK+DG+ GLYRG GVS
Sbjct: 124 AAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKI-FKADGITGLYRGFGVS 182

Query: 833 VQGIIIYRASYXGFYDTARGMLPXPK 910
           VQGIIIYRA+Y GFYDTARGMLP PK
Sbjct: 183 VQGIIIYRAAYFGFYDTARGMLPDPK 208



 Score = 66.1 bits (154), Expect = 4e-13
 Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
 Frame = +3

Query: 285 MSNXADPVAFXKDXLXGGISAAVSKXAVTPIERXXXXXXXXXXXXXIAGDQRYKGIVDXF 464
           MS  ADPVAF KD L GG++AA+SK  V PIER             I+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 465 V--PNPQG 482
           V  P  QG
Sbjct: 61  VRIPKEQG 68



 Score = 52.8 bits (121), Expect = 4e-09
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = +3

Query: 693 LDFARTRLAADVGKGDGQR*FSGLGNCXXKI 785
           LDFARTRLAADVGK  G+R F+GLGNC  KI
Sbjct: 136 LDFARTRLAADVGKAGGEREFTGLGNCLTKI 166


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  161 bits (392), Expect = 6e-42
 Identities = 85/146 (58%), Positives = 93/146 (63%), Gaps = 1/146 (0%)
 Frame = +2

Query: 476 PREQGLLSFWRGNFAKVXXYFPTHALXFAFNDEYKXVYLGGVDKKTQFWRYFXXXXXXXX 655
           P+EQG LS+WRGN A V  YFPT AL FAF D+YK V+LGGVDK TQF RYF        
Sbjct: 64  PKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGG 123

Query: 656 XXXXTSLCFVYPLGL-RTYPTCRRCR*GRWPALILRSRKLXXXNFKSDGLIGLYRGSGVS 832
               TSLCFVYPL   RT       + G           L    FK+DG+ GLYRG GVS
Sbjct: 124 AAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLGNCLTKI-FKADGITGLYRGFGVS 182

Query: 833 VQGIIIYRASYXGFYDTARGMLPXPK 910
           VQGIIIYRA+Y GFYDTARGMLP PK
Sbjct: 183 VQGIIIYRAAYFGFYDTARGMLPDPK 208



 Score = 66.1 bits (154), Expect = 4e-13
 Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
 Frame = +3

Query: 285 MSNXADPVAFXKDXLXGGISAAVSKXAVTPIERXXXXXXXXXXXXXIAGDQRYKGIVDXF 464
           MS  ADPVAF KD L GG++AA+SK  V PIER             I+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 465 V--PNPQG 482
           V  P  QG
Sbjct: 61  VRIPKEQG 68



 Score = 52.8 bits (121), Expect = 4e-09
 Identities = 24/31 (77%), Positives = 26/31 (83%)
 Frame = +3

Query: 693 LDFARTRLAADVGKGDGQR*FSGLGNCXXKI 785
           LDFARTRLAADVGK  G+R F+GLGNC  KI
Sbjct: 136 LDFARTRLAADVGKAGGEREFTGLGNCLTKI 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,965
Number of Sequences: 438
Number of extensions: 3145
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)