Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_A12
         (1468 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    33   0.099
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.13 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.40 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.6  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   3.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   6.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.1 bits (72), Expect = 0.099
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +1

Query: 1246 PXPPPXXXPPPRXXPPXXXNPPGXP 1320
            P PPP   PPP   PP    PP  P
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAP 1731



 Score = 31.5 bits (68), Expect = 0.30
 Identities = 12/29 (41%), Positives = 13/29 (44%)
 Frame = +3

Query: 1239 PXPXPAXPGXPPPPAXSPXXXXPPWVPXP 1325
            P P P     PPPP+  P    PP  P P
Sbjct: 1705 PTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 19/61 (31%), Positives = 20/61 (32%)
 Frame = +3

Query: 1251 PAXPGXPPPPAXSPXXXXPPWVPXPQXXXXAGXXXPPXXQXXXXXXXXPXPXGPGXAXPP 1430
            PA P   PP    P    PP +  P          PP           P P GP  A PP
Sbjct: 1683 PAHPVSTPP--VRPQSAAPPQMSAPTPP-------PPPMSVPPPPSAPPMPAGPPSAPPP 1733

Query: 1431 P 1433
            P
Sbjct: 1734 P 1734


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 28/92 (30%), Positives = 28/92 (30%)
 Frame = -1

Query: 1468 GWXGSRXXXXXGGGGXAXPGPXGXGXXXXXXXXWXXGGXXXPAXXXXXGXGTQGGXX*XG 1289
            G  G       GG G   PGP G G           GG            G  GG    G
Sbjct: 184  GHNGGGFGGFGGGSGGPPPGPGGFGGFGGF------GGEGHHHGGHGGFGGGPGGFE--G 235

Query: 1288 EXAGGGGXPGXAGXGXGSXXVXPPXGXXXPGG 1193
               G GG PG  G G G     P      PGG
Sbjct: 236  GPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGG 267



 Score = 27.5 bits (58), Expect = 4.9
 Identities = 27/82 (32%), Positives = 28/82 (34%)
 Frame = -3

Query: 1313 PGGXXXXGGXXRGGGXSXGGGXGXXFXGXXPXXRXXXPGGXXXXGFXSWGGXGVXXHLXL 1134
            PGG    GG   G G   GG  G    G  P      PGG    G   +GG        L
Sbjct: 204  PGGFGGFGGFG-GEGHHHGGHGGF---GGGPGGFEGGPGGFGG-GPGGFGGG-------L 251

Query: 1133 XGGGXXXXGVASXLGGAGRPXW 1068
             G G    G     GG G P W
Sbjct: 252  GGFGGGPGGFGGGPGGHGGPGW 273


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.40
 Identities = 19/56 (33%), Positives = 20/56 (35%)
 Frame = +3

Query: 1269 PPPPAXSPXXXXPPWVPXPQXXXXAGXXXPPXXQXXXXXXXXPXPXGPGXAXPPPP 1436
            PPPPA       P  +P P      G   PP           P P G   A PPPP
Sbjct: 734  PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPP-----------PPPPGVAGAGPPPP 778



 Score = 29.9 bits (64), Expect = 0.93
 Identities = 18/41 (43%), Positives = 18/41 (43%)
 Frame = +3

Query: 1239 PXPXPAXPGXPPPPAXSPXXXXPPWVPXPQXXXXAGXXXPP 1361
            P P PA P   PPPA  P    PP  P P     AG   PP
Sbjct: 742  PTPAPA-PIPVPPPA--PIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +3

Query: 1218 GGXTSXEPXPXPAXPGXPPPPAXSP 1292
            GG     P P  A  G PPPP   P
Sbjct: 759  GGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/28 (46%), Positives = 13/28 (46%)
 Frame = +1

Query: 1231 PXNXNPXPPPXXXPPPRXXPPXXXNPPG 1314
            P N  P PPP    PP   PP    PPG
Sbjct: 6    PGNPPPPPPPPGFEPPSQPPPPP--PPG 31



 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +1

Query: 1246 PXPPPXXXPPPRXXPPXXXNPPGXP 1320
            P  PP   PPP   PP    PP  P
Sbjct: 6    PGNPPPPPPPPGFEPPSQPPPPPPP 30


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 20/77 (25%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
 Frame = +3

Query: 1212 PXGGXTSXEPXPXPAXP--GXPPPPAXSPXXXXPPWVPXPQXXXXAGXXXPPXXQXXXXX 1385
            P  G ++  P P  + P  G  PPP  S      P  P P     +    PP        
Sbjct: 354  PPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGN-ASRT 412

Query: 1386 XXXPXPXGPGXAXPPPP 1436
               P P  P      PP
Sbjct: 413  STPPVPTPPSLPPSAPP 429



 Score = 27.5 bits (58), Expect = 4.9
 Identities = 17/74 (22%), Positives = 19/74 (25%)
 Frame = +3

Query: 1212 PXGGXTSXEPXPXPAXPGXPPPPAXSPXXXXPPWVPXPQXXXXAGXXXPPXXQXXXXXXX 1391
            P G  +     P P  P  PP    S     PP +P             P          
Sbjct: 405  PLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMP 464

Query: 1392 XPXPXGPGXAXPPP 1433
               P  P    PPP
Sbjct: 465  AAPPLPPAAPAPPP 478


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
            Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 16/53 (30%), Positives = 17/53 (32%)
 Frame = +1

Query: 1156 PXPPHXKKPXXXXPPGXXXRXXGXXPXNXNPXPPPXXXPPPRXXPPXXXNPPG 1314
            P PP   KP    PP          P    P PP    P     PP   + PG
Sbjct: 208  PPPPMHHKPGEHMPPPPMHHE----PGEHMPPPPMHHEPGEHMPPPPMHHEPG 256



 Score = 27.5 bits (58), Expect = 4.9
 Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
 Frame = +1

Query: 1123 PPPXXXRCXX-TPXPPHXKKPXXXXPPGXXXRXXGXXPXNXNPXPPPXXXPPPRXXPPXX 1299
            PPP   +     P PP   +P    PP          P    P PP    P     PP  
Sbjct: 209  PPPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHE----PGEHMPPPPMHHEPGEHMPPPPM 264

Query: 1300 XNPPG 1314
             + PG
Sbjct: 265  HHEPG 269



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/64 (26%), Positives = 19/64 (29%)
 Frame = +1

Query: 1123 PPPXXXRCXXTPXPPHXKKPXXXXPPGXXXRXXGXXPXNXNPXPPPXXXPPPRXXPPXXX 1302
            PP         P PP   +P    PP          P    P PP    P     PP   
Sbjct: 223  PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE----PGEHMPPPPMHHEPGEHMPPPPMH 278

Query: 1303 NPPG 1314
            + PG
Sbjct: 279  HEPG 282



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/64 (26%), Positives = 19/64 (29%)
 Frame = +1

Query: 1123 PPPXXXRCXXTPXPPHXKKPXXXXPPGXXXRXXGXXPXNXNPXPPPXXXPPPRXXPPXXX 1302
            PP         P PP   +P    PP          P    P PP    P     PP   
Sbjct: 236  PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE----PGEHMPPPPMHHEPGEHMPPPPMH 291

Query: 1303 NPPG 1314
            + PG
Sbjct: 292  HEPG 295



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/64 (26%), Positives = 19/64 (29%)
 Frame = +1

Query: 1123 PPPXXXRCXXTPXPPHXKKPXXXXPPGXXXRXXGXXPXNXNPXPPPXXXPPPRXXPPXXX 1302
            PP         P PP   +P    PP          P    P PP    P     PP   
Sbjct: 249  PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE----PGEHMPPPPMHHEPGEHMPPPPMH 304

Query: 1303 NPPG 1314
            + PG
Sbjct: 305  HEPG 308



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/64 (26%), Positives = 19/64 (29%)
 Frame = +1

Query: 1123 PPPXXXRCXXTPXPPHXKKPXXXXPPGXXXRXXGXXPXNXNPXPPPXXXPPPRXXPPXXX 1302
            PP         P PP   +P    PP          P    P PP    P     PP   
Sbjct: 262  PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE----PGEHMPPPPMHHEPGEHMPPPPMH 317

Query: 1303 NPPG 1314
            + PG
Sbjct: 318  HEPG 321



 Score = 26.6 bits (56), Expect = 8.6
 Identities = 17/64 (26%), Positives = 19/64 (29%)
 Frame = +1

Query: 1123 PPPXXXRCXXTPXPPHXKKPXXXXPPGXXXRXXGXXPXNXNPXPPPXXXPPPRXXPPXXX 1302
            PP         P PP   +P    PP          P    P PP    P     PP   
Sbjct: 275  PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHE----PGEHMPPPPMHHEPGEHMPPPPMH 330

Query: 1303 NPPG 1314
            + PG
Sbjct: 331  HEPG 334


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 23/80 (28%), Positives = 23/80 (28%)
 Frame = +3

Query: 1197 PGXXXPXGGXTSXEPXPXPAXPGXPPPPAXSPXXXXPPWVPXPQXXXXAGXXXPPXXQXX 1376
            P    P     S    P PA  G PP P   P    PP VP P                 
Sbjct: 1097 PSVAAPPVPKPSVAVPPVPAPSGAPPVP--KPSVAAPP-VPVPSGAPPVPKPSVAAPPVP 1153

Query: 1377 XXXXXXPXPXGPGXAXPPPP 1436
                  P P  P  A PP P
Sbjct: 1154 APSGAPPVPK-PSVAAPPVP 1172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,757
Number of Sequences: 5004
Number of extensions: 17577
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 76
effective length of database: 1,982,174
effective search space used: 816655688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)