Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_A12
         (1468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.31 
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   5.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.31
 Identities = 15/43 (34%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
 Frame = +3

Query: 1212 PXGGXTSXEPXPX--PAXP--GXPPPPAXSPXXXXPPWVPXPQ 1328
            P  G    +P P   P  P  G PP P+  P    PP  P  Q
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQ 58


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 5.0
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 1239 PXPXPAXPGXPPPPAXSPXXXXPPWVPXPQ 1328
            P P P  P     P   P    P ++P P+
Sbjct: 107  PQPRPPHPRLRREPEAEPGNNRPVYIPQPR 136



 Score = 23.4 bits (48), Expect = 5.0
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 1239 PXPXPAXPGXPPPPAXSPXXXXPPWVPXPQ 1328
            P P P  P     P   P    P ++P P+
Sbjct: 133  PQPRPPHPRLRREPEAEPGNNRPVYIPQPR 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,442
Number of Sequences: 438
Number of extensions: 4221
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 61
effective length of database: 119,625
effective search space used: 51079875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)