Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_A04
         (887 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946...    29   3.7  
01_06_1728 + 39480252-39480450,39480552-39481224,39481554-394816...    29   6.5  

>04_04_0689 -
           27292271-27292709,27293717-27293856,27294572-27294664,
           27295614-27296012,27296258-27296392,27296482-27296835
          Length = 519

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 21/74 (28%), Positives = 27/74 (36%)
 Frame = +1

Query: 664 RSLTRCARSFGCGERYXSLKGGNTVIHRIRGXXRKXHVSKXPQKARNRKXPXGWRFXIGP 843
           R+   CA + G G+     K     +   R        S+ P K R R+ P G R    P
Sbjct: 28  RATVSCAAAAGGGKASPRGKENVWSVDNDRAAAAAAEASRGP-KHRRRRRPGGRRLPPPP 86

Query: 844 PPXRASQKSXPSXR 885
           PP R   K     R
Sbjct: 87  PPGRRKGKDAAGSR 100


>01_06_1728 +
           39480252-39480450,39480552-39481224,39481554-39481638,
           39481731-39481820,39481953-39482026,39482421-39482505,
           39482582-39482668,39482797-39482927,39483642-39483723,
           39483810-39483857,39484793-39484912
          Length = 557

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = -1

Query: 860 DARXGGGPXXKRQPXGXLRFLAFCGXLLTXSFLXYPLILWITVLPPLSEXYRSPQPNDRA 681
           DA  GG P  +    G  R +     LL+   +  PL+L  T      E +RSP P+D  
Sbjct: 35  DADGGGKPSPRTSKPGRKRLVLTASVLLSF-LIGLPLLLKST------EIHRSPLPSDAI 87

Query: 680 QRVSERGSGRAPN 642
             +S R     P+
Sbjct: 88  AALSRRLHSNPPS 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,141,049
Number of Sequences: 37544
Number of extensions: 256905
Number of successful extensions: 494
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)