Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP24_F_A01
         (1195 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0738 - 10824121-10825572                                         33   0.34 
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600...    32   1.0  
03_05_0704 - 26953474-26953643,26953770-26953801,26953915-269540...    29   5.5  

>03_02_0738 - 10824121-10825572
          Length = 483

 Score = 33.5 bits (73), Expect = 0.34
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -2

Query: 909 PXXSXLXXXXSPRPXXPPXSSXPXLSXPPPFP 814
           P  + +    SP P  PP SS P LS PPP P
Sbjct: 67  PTITAVAADTSPPPPSPPSSSPPPLSFPPPPP 98


>01_06_0090 + 26358051-26359157,26359582-26359701,26359968-26360099,
            26360194-26360375,26360488-26360602,26362001-26362135,
            26362261-26362395
          Length = 641

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 26/84 (30%), Positives = 31/84 (36%)
 Frame = -2

Query: 1029 PPLXPAXLRVXSAGLSXGVSXXGXLLRPSXSGXFXXCPRXPXXSXLXXXXSPRPXXPPXS 850
            PP+ PA  +  S   S  VS       PS S      P     S      +PR   P  S
Sbjct: 210  PPVPPAAFKSKSYSASSRVSLPSTSA-PSPSSSTSTSPTYSCSSS-DTVTTPRNRKPELS 267

Query: 849  SXPXLSXPPPFPXXRASVCXXLSA 778
              P +  PPP P    SVC   +A
Sbjct: 268  KLPPIPPPPPMP--ALSVCGRAAA 289


>03_05_0704 -
           26953474-26953643,26953770-26953801,26953915-26954009,
           26954107-26954180,26954283-26954412,26954522-26954585,
           26954660-26954722,26954795-26954937,26955386-26955523,
           26955610-26955731,26955805-26955976,26956559-26956630,
           26956753-26956887,26956987-26957103,26957184-26957316,
           26957455-26957561,26958060-26958077,26958235-26958379,
           26958472-26958671,26960744-26961421
          Length = 935

 Score = 29.5 bits (63), Expect = 5.5
 Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = +2

Query: 806 RXXGXGGGXERXGXDXHGGXXGRGEXXXXXXEXXGXR-GXXXNXPEXXGRRXXPK 967
           R  G GGG  R G    GG  GRG          G R G      E  GR   P+
Sbjct: 11  RRGGRGGGGGREGGGGGGGGGGRGGQGRGDLGVVGERQGGGRGAGERGGRHDAPR 65


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.310    0.138    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,570,995
Number of Sequences: 37544
Number of extensions: 170315
Number of successful extensions: 568
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3643211076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)