Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_P24
(919 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 202 6e-53
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 202 6e-53
SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyce... 29 0.70
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.92
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 1.2
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||... 27 4.9
SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|... 27 4.9
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2... 26 6.5
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 8.6
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 202 bits (493), Expect = 6e-53
Identities = 91/158 (57%), Positives = 119/158 (75%)
Frame = +1
Query: 82 MSSLXLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 261
M++L QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSR 60
Query: 262 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 441
R+RK A+R GRH G+GKR+GTA ARMP +W + KID+HLY
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLY 120
Query: 442 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 555
H+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 202 bits (493), Expect = 6e-53
Identities = 91/158 (57%), Positives = 119/158 (75%)
Frame = +1
Query: 82 MSSLXLQKRLAASVMRCGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSR 261
M++L QKRLAASV++CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR
Sbjct: 1 MANLRTQKRLAASVLKCGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSR 60
Query: 262 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 441
R+RK A+R GRH G+GKR+GTA ARMP +W + KID+HLY
Sbjct: 61 FRIRKTHAAKRLGRHTGYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLY 120
Query: 442 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 555
H+LY++AKGN FK+KR L+E+I R KAE RTK++ +Q
Sbjct: 121 HTLYLEAKGNTFKHKRALIEHIQRAKAEANRTKLIQEQ 158
>SPBC9B6.07 |||nucleolar protein Nop52 family |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 284 SVFLRTRAREWTATGFLMTRPSLIILRMFC 195
S F T REWT L T +++R FC
Sbjct: 85 STFWETMGREWTGIDILRTDKFYLLMRRFC 114
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.92
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -2
Query: 225 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 136
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 204 DVLSGVGVCDLIDFIWIQPHLLFTTSHNRGCK 109
+VLS + ++D + PHLL +S N+ CK
Sbjct: 237 EVLSKLPYFHILDKSFFSPHLLLQSSENQACK 268
>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Frame = +1
Query: 52 LVCVGSH-RVRMSSLXLQKRLAASVMRCGKK--KVWLDPNEINEIANTNSRQNIRK 210
+V VG + ++ S + + K L S MRCG+K W++ + + NT+ + K
Sbjct: 305 IVLVGKYTHLQDSYISVIKALEHSAMRCGRKLDLQWVEASHLEASTNTSDPLSYHK 360
>SPAC1F7.07c |fip1||iron permease Fip1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Frame = -2
Query: 630 FLLLGGNT-----FLAALACLLYFIAAGL 559
F+ GGN FL A C+LY I+AGL
Sbjct: 195 FIYRGGNVMNLQWFLIASTCILYLISAGL 223
>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 26.2 bits (55), Expect = 6.5
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -1
Query: 361 VPSVAYAHWQYLFSYQS 311
+PSV YA WQ L Y S
Sbjct: 255 IPSVCYAAWQLLAKYDS 271
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 8.6
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -3
Query: 521 AFFLWMYSMSTRLFLNTLPFAFM-*SEWYRCL 429
AF LW+YS+ L+L + W++CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,194,401
Number of Sequences: 5004
Number of extensions: 62019
Number of successful extensions: 186
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 466510270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -