Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_P18
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.14 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 14/36 (38%), Positives = 14/36 (38%)
 Frame = -3

Query: 621 PVXPPXXGXXXFPPPEXPPXPPXRGGGGXGXXXPXP 514
           P  PP  G     PP  PP PP    GG     P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 15/43 (34%), Positives = 15/43 (34%), Gaps = 5/43 (11%)
 Frame = -3

Query: 618 VXPPXXGXXXFPPPEX-----PPXPPXRGGGGXGXXXPXPXSP 505
           V  P       PPP       PP PP  G  G G   P P  P
Sbjct: 741 VPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -3

Query: 636 PXXXXPVXPPXXGXXXFPPPEXPPXPPXRG 547
           P    P  PP  G   F PP  PP PP  G
Sbjct: 5   PPGNPPPPPPPPG---FEPPSQPPPPPPPG 31


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 661 TPKXPPXXXTXKRAXPRGXPXKPPPP 738
           +P+ PP   T K+A P   P  PPPP
Sbjct: 220 SPEIPPTY-TPKQADPLPAPPPPPPP 244


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = -3

Query: 822 GPG-FXGXPRVFXGGVXXFKXXGGFXSXXWG-GGFXGXXPGXG 700
           GPG F G P  F GG   F   GG      G GGF G   G G
Sbjct: 229 GPGGFEGGPGGFGGGPGGF--GGGLGGFGGGPGGFGGGPGGHG 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.147    0.495 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,642,030
Number of Sequences: 5004
Number of extensions: 16536
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)