Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_P16
         (903 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   3.6  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   8.4  

>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +2

Query: 293  AVNMKSQENDARQLSEHQDRFITTKYTSLQMKGWVRRHL--RYEEMLAASADHYQRYAVP 466
            + + +S  +D  + +    +   + +T  + +GW   H+  +Y   L  SA+H Q+    
Sbjct: 883  STDFQSHWSDWEEYNGGLTKVQASNWTGTRRQGWEGHHIHVQYWSDLGGSANHMQQSDYG 942

Query: 467  PKSARYLDH 493
             K  R+L H
Sbjct: 943  FKYRRFLPH 951


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 476 QTLEARRTFDNDQHLLPAFPRXGGDAGPNLSSVNSCTS 363
           QTLE  RTF N      +FP       P++ S N+ T+
Sbjct: 57  QTLERERTFKNPPKDGTSFPDLQKAVKPHVDSFNALTN 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,668
Number of Sequences: 5004
Number of extensions: 56843
Number of successful extensions: 187
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)