Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_P16
         (903 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92838-3|CAB07409.2|  440|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical ...    28   7.9  

>Z92838-3|CAB07409.2|  440|Caenorhabditis elegans Hypothetical
           protein T03D8.4 protein.
          Length = 440

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 464 PPKSARYLDHSVNHVSGAHVPLKAAQINLSPSESVQFVPIATDP--ITVVNVDGPAPIHS 637
           PP+  RY   + N     +VP  A+ +N  PS +   VP+A     +T      P  +H 
Sbjct: 238 PPREIRYAYRTTNRQPVVYVP-SASPVN-QPSHASNTVPVAVASYLVTANPSSQPIQLHI 295

Query: 638 GPLTQSPK 661
            P   SP+
Sbjct: 296 LPPIPSPQ 303


>AL021503-3|CAA16423.1|  324|Caenorhabditis elegans Hypothetical
           protein Y68A4A.6 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -1

Query: 237 VARIIVIVGLVDIFLFVPRFVDDLSDRDRHQQQPDY 130
           +  + V+  ++  F+++P  +D   +RD H QQ  Y
Sbjct: 190 ITALNVVTSVLSPFIYIPIMMDLRKNRDSHSQQQKY 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,833,618
Number of Sequences: 27780
Number of extensions: 335556
Number of successful extensions: 1215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2297313942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)