Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_P08
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha...    98   1e-21
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo...    88   2e-18
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar...    84   3e-17
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    29   1.2  
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|...    28   1.6  
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual            26   6.3  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   6.3  

>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 321

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 48/115 (41%), Positives = 76/115 (66%)
 Frame = +3

Query: 222 AKEKPPINVVGDVGGRIAXXXXXXXXXXQSFVAAAEVLKECGAYKIYVLATHGLLSSDAP 401
           A E   + +VGDV  ++A           +   AA+ LK+ GA  +Y + THG+LS  A 
Sbjct: 202 ANEVSRMVLVGDVRDKLAILVDDMADTCGTLGLAAKTLKDNGAKAVYAIVTHGILSGKAI 261

Query: 402 RLIEDSPIDEVVVTNTVPHELQKMQCNKIKTIDISILISEAIRRIHNKESMSYLF 566
           ++I +S +++V+VTNT+PH+ ++  C+KI+TIDIS +++E IRRIH+ ES+S LF
Sbjct: 262 KVINESALEKVIVTNTIPHDDKRSLCSKIETIDISGVLAECIRRIHHGESVSVLF 316


>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
           Prs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 87.8 bits (208), Expect = 2e-18
 Identities = 45/113 (39%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
 Frame = +3

Query: 240 INVVGDVGGRIAXXXXXXXXXXQSFVAAAE-VLKECGAYKIYVLATHGLLSSDAPRLIED 416
           I +VGDV G+ A           +F+ A+E ++K CGA ++ V+ THG+  +   + ++ 
Sbjct: 294 ITLVGDVNGKTALLIDDTIENPTAFIVASEHLVKRCGAKRVIVIGTHGIFQNKCLKDLQS 353

Query: 417 SP-IDEVVVTNTVPHELQK-MQCNKIKTIDISILISEAIRRIHNKESMSYLFK 569
              I+++VVTNT P + Q  ++C+K+  IDIS +++EAIRR HN ES+S+LFK
Sbjct: 354 CEYIEQIVVTNTYPIKPQAVLECDKLTVIDISGVLAEAIRRTHNGESISFLFK 406


>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 341

 Score = 83.8 bits (198), Expect = 3e-17
 Identities = 47/107 (43%), Positives = 64/107 (59%)
 Frame = +3

Query: 246 VVGDVGGRIAXXXXXXXXXXQSFVAAAEVLKECGAYKIYVLATHGLLSSDAPRLIEDSPI 425
           +VGDV  ++A           + V AAE +KE GA KIY L TH +LS DA   ++ S I
Sbjct: 230 LVGDVQNKVAILIDDLIDTAYTLVRAAEFVKEHGASKIYALVTHCVLSGDAIERVKLSCI 289

Query: 426 DEVVVTNTVPHELQKMQCNKIKTIDISILISEAIRRIHNKESMSYLF 566
           D+++VTNT P  +    C  I  ID++   +EAIRRIHN ES+S L+
Sbjct: 290 DKLIVTNTAPQTITPSGCFDI--IDVAPTFAEAIRRIHNGESISILY 334


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = +3

Query: 312 FVAAAEVLKECGAYKIYVLATHGLLSSDAPRLIEDSPIDEVVVT 443
           F+   EV +  GAYKI    + GLL    P+ + D+PI E+  T
Sbjct: 59  FLIGEEVAQYNGAYKI----SRGLLDKFGPKRVIDTPITEMGFT 98


>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 290

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 230 FFSWMCRHSHRYIHSTRPGYTWR*IPSINLITFGFLLFSMY 108
           +F W    + RY+H T  G+    I ++ +ITF +  + MY
Sbjct: 127 YFVWDLYITVRYVHITGIGFVIHAIAALFVITFSYRPYLMY 167


>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 23 YREPLRFLSWLCKESYFIC 79
          ++ P +FL+W  K +Y +C
Sbjct: 7  FKHPCQFLTWNSKHNYIVC 25


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
 Frame = +3

Query: 351 YKIYVLATHGLLSSDAPRLIEDSPIDE--------VVVTNTVPHELQKMQCNK----IKT 494
           Y +YVLA +       P  IED  ID+         +  + VP  L   +C      I+ 
Sbjct: 352 YSVYVLACYTSTIVGLPLSIEDVDIDQSLPNSFDFTLENDQVPPRLIASECTSLEVFIQH 411

Query: 495 IDISILISEAIRRIHNKESMS 557
           I +S ++S  +R+++  +S S
Sbjct: 412 ITLSRILSHFVRKVYPVKSPS 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,682
Number of Sequences: 5004
Number of extensions: 56490
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)