Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_P08
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070...    52   8e-07
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143...    46   4e-05
01_04_0003 - 14989160-14989445,14989673-14989807,14991418-149915...    29   3.8  
11_05_0087 + 18970741-18972702                                         29   5.0  
03_06_0555 - 34693067-34693196,34693450-34693688,34693956-346940...    29   5.0  
01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833     29   6.7  

>06_03_0763 -
           24405525-24405701,24406209-24406368,24406924-24407005,
           24407098-24407167,24407443-24407607,24407731-24407874,
           24408467-24408715,24409006-24409221,24409306-24409398
          Length = 451

 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 1/107 (0%)
 Frame = +3

Query: 240 INVVGDVGGRIAXXXXXXXXXXQSFVAAAEVLKECGAYKIYVLATHGLLSSDAPRLIEDS 419
           ++++GDV G++A           +  +AA +LK+ GA  +Y  +TH + S  A   +   
Sbjct: 291 MHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEGAEAVYACSTHAVFSPPAIERLSGG 350

Query: 420 PIDEVVVTNTVPHELQKMQC-NKIKTIDISILISEAIRRIHNKESMS 557
             +EV+VTN++   L + +C  ++  + ++ L++E I  +H   S S
Sbjct: 351 IFEEVIVTNSI--LLPEHKCFPQLTVLSMANLVAETIWHVHRDGSSS 395


>02_01_0219 -
           1437685-1437723,1437932-1438091,1438385-1438514,
           1438627-1438696,1439264-1439407,1439771-1439837,
           1439970-1440019,1440386-1440559,1440881-1440934,
           1441008-1441112
          Length = 330

 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 23/79 (29%), Positives = 43/79 (54%)
 Frame = +3

Query: 324 AEVLKECGAYKIYVLATHGLLSSDAPRLIEDSPIDEVVVTNTVPHELQKMQCNKIKTIDI 503
           AE+L + GA ++Y   TH + S  A   +      EV++TNT+P +  K    ++  + +
Sbjct: 244 AELLHQEGAREVYACCTHAVFSPPAIERLSSGLFQEVIITNTIPLKEDK-SFPQLTILSV 302

Query: 504 SILISEAIRRIHNKESMSY 560
           + L+ E I R+H+  S+ +
Sbjct: 303 ANLLGETIWRVHDDCSVGH 321


>01_04_0003 -
           14989160-14989445,14989673-14989807,14991418-14991508,
           14991571-14991712,14991924-14992403,14992610-14993548
          Length = 690

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 111 HGEQKEAESDEVDGRYSPPC 170
           H E+ EAE D+++GR S PC
Sbjct: 211 HDEKYEAEDDQMNGRNSSPC 230


>11_05_0087 + 18970741-18972702
          Length = 653

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/55 (36%), Positives = 28/55 (50%)
 Frame = +3

Query: 87  LRLAIAVIHGEQKEAESDEVDGRYSPPCIPRSRTMDVSVGVPAHPAKEKPPINVV 251
           L L + V+H E+   E DEVDG    P +PR         VP    +E+P ++VV
Sbjct: 4   LMLHLPVLH-ERVTVEFDEVDGDVDVPGLPRLCRQRPCRAVP-DGGQEEPQLHVV 56


>03_06_0555 -
           34693067-34693196,34693450-34693688,34693956-34694033,
           34694057-34694131,34694667-34694831,34695101-34695151,
           34695250-34695300,34695462-34695533,34695736-34695948,
           34696064-34696214,34696376-34696490,34696665-34696748,
           34696841-34696964,34697064-34697145,34697238-34697299,
           34697787-34697840,34697944-34698147
          Length = 649

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +3

Query: 465 QKMQCNKIKTIDISILISEAIRRIHNKES 551
           +KM+C+ + + + S L+SEA+R++  K S
Sbjct: 93  EKMRCHNVSSTERSKLVSEALRKMDGKYS 121


>01_02_0072 + 10828121-10828804,10828912-10828947,10829042-10829833
          Length = 503

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -3

Query: 265 PPTSPTTFIGGFSLAGCAGTPTDTSIVRDLGIHGGEYRPSTSSLSASFCSPC 110
           PP+S     G  S A  AG  T   IV+D G  G      T +L  ++ + C
Sbjct: 88  PPSSDPMPGGAPSAAPAAGAATVYDIVKDFGAAGDGVTDDTDALKTAWDTAC 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,186,236
Number of Sequences: 37544
Number of extensions: 395945
Number of successful extensions: 1100
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)