Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_P05
         (898 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0335 - 2583476-2583493,2583919-2583965,2584151-2584274,258...    31   1.6  
06_03_1508 - 30653967-30654245,30654342-30654631,30654773-306548...    30   2.2  
12_01_0651 - 5507935-5509638                                           30   2.9  
01_07_0124 + 41212728-41212922,41215156-41215210,41215336-412171...    29   6.6  
05_05_0338 + 24204301-24206262,24206337-24206495,24206864-242070...    28   8.8  

>12_01_0335 -
           2583476-2583493,2583919-2583965,2584151-2584274,
           2584421-2584665,2585281-2585404,2585424-2585456
          Length = 196

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 775 CPFSSVLDVSSLEASQCERKRNLVWHYVGRHQSR 674
           CP   +  +  +EASQC+  R +  H  GRH SR
Sbjct: 108 CPDDFLSCLICMEASQCDDPRYIPKHKFGRHMSR 141


>06_03_1508 - 30653967-30654245,30654342-30654631,30654773-30654841,
            30654854-30654921,30655016-30655492,30655578-30655874,
            30655974-30656824,30656917-30656990,30657270-30657292,
            30657709-30657772,30658098-30658370,30658511-30658587,
            30658686-30658912
          Length = 1022

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 375  NYPKKLVWRNIILFTYLHIAALYGGYLF-LFHAKWQTDLFAYILYVMSGLGITAGAHRLW 551
            N P+  +W N ++   L       GY F +F       L++ +L V+  L  T      +
Sbjct: 892  NNPRSSIWENYVVLVALVYCVTGIGYTFAIFFQPGSAQLWSALLPVVLTLIATQQKDTFF 951

Query: 552  AHKSYKAKWPLRVILIIFNSLGFSG 626
            A+  Y  KW L    +I N+  +SG
Sbjct: 952  ANLCY-TKWALEG-FVIANAQRYSG 974


>12_01_0651 - 5507935-5509638
          Length = 567

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 778 PCPFSSVLDVSSLEASQCERKRNLVWHYVGRHQSRSIYDACDD 650
           PC F S L   +L    C++  N+ +HY   H  ++I   CD+
Sbjct: 502 PCEFKSSL---ALLVENCDKLMNISFHYPPGHDQKNIRVFCDN 541


>01_07_0124 +
           41212728-41212922,41215156-41215210,41215336-41217128,
           41217363-41217521,41217883-41218054,41218173-41218471,
           41219060-41219368
          Length = 993

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +3

Query: 288 VKDANGVLFENDADTPDLGLSSTPVQQADNYPKKLVWRNII 410
           + D  G L        D  +   PV + DN+  K++WRNI+
Sbjct: 807 IMDTLGALALATEPPNDAMMKRPPVGRGDNFITKVMWRNIV 847


>05_05_0338 +
           24204301-24206262,24206337-24206495,24206864-24207035,
           24207544-24207842,24208301-24208355,24208438-24208487,
           24208522-24208827
          Length = 1000

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 288 VKDANGVLFENDADTPDLGLSSTPVQQADNYPKKLVWRNII---LFTYLHIAAL 440
           + D  G L        D  +   PV++ DN+  +++WRNI+   L+  L +A L
Sbjct: 780 IMDTLGALALATEPPNDEMMKRPPVRRGDNFITRIMWRNILGQGLYQLLVLATL 833


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,274,919
Number of Sequences: 37544
Number of extensions: 499927
Number of successful extensions: 1264
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1262
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2530383840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)