Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_O23
         (979 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.14 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.0  
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    27   3.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   7.0  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 792 PPXXPPPXXPXPGXG*PXNPXPP 860
           PP  PPP  P PG   P  P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27



 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 768 ARXPPLXTPPXXPPPXXPXPGXG*PXNPXPP 860
           A  PP   PP  PPP    P    P  P PP
Sbjct: 2   ASLPPGNPPPPPPPPGFEPPSQ--PPPPPPP 30


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 15/52 (28%), Positives = 18/52 (34%)
 Frame = +1

Query: 673  APAPPXXXPPKXXPXXVGXXXXTPXXXFKNSXPVXPPXKPPPXXPLPXXPTP 828
            A APP   P    P  +      P     +  P  PP  P P   +P  P P
Sbjct: 1029 ADAPPIPVPSTAPPVPI-PTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAP 1079



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 17/68 (25%), Positives = 21/68 (30%)
 Frame = +1

Query: 625  PXPXKRAGXGGVFSLKAPAPPXXXPPKXXPXXVGXXXXTPXXXFKNSXPVXPPXKPPPXX 804
            P P   +G   V    A  PP   P +  P         P      + PV  P    P  
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPV 1229

Query: 805  PLPXXPTP 828
            P+P    P
Sbjct: 1230 PVPTAKAP 1237


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/57 (29%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
 Frame = +1

Query: 670  KAPAPPXXXPPKXXPXXVGXXXXTPXXXFKNSXPVXPPXKPPPXXP---LPXXPTPG 831
            ++ APP    P   P  +      P        P  PP  PPP  P    P  P PG
Sbjct: 1695 QSAAPPQMSAPTPPPPPMS----VPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 777  PPLXTPPXXPPPXXPXPGXG*PXNPXPP 860
            PP+  PP  PP   P P  G P  P PP
Sbjct: 1710 PPMSVPP--PPSAPPMPA-GPPSAPPPP 1734


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 19/61 (31%), Positives = 21/61 (34%)
 Frame = -1

Query: 898 GKSXXPXXRXXEKGGXGFXG*PXPGXGXKGGGXXGGVXRGGXRAXNF*XSXGGFXXPXQX 719
           G    P  R    G  G  G    G G    G  GG  RGG    +   S GGF    + 
Sbjct: 129 GARNGPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRG 188

Query: 718 G 716
           G
Sbjct: 189 G 189



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -1

Query: 850 GFXG*PXPGXGXKGGGXXGGVXRGGXRAXNF*XSXGGF 737
           GF G    G G    G  GG  RGG R      S GGF
Sbjct: 153 GFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGF 190


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 13/43 (30%), Positives = 14/43 (32%)
 Frame = +3

Query: 780 PLXTPPXXPPPXXPXPGXG*PXNPXPPFSXXRXXGXXLFPKPP 908
           PL  PP  PPP  P         P P  +          P PP
Sbjct: 234 PLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPP 276


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +3

Query: 780 PLXTPPXXPPPXXPXPGXG*PXNPXPP 860
           P+   P  PPP     G G P  P PP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,060,180
Number of Sequences: 5004
Number of extensions: 27364
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)