Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_O22
         (898 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.68 
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    29   1.2  
SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit L13...    29   1.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.8  
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    26   6.3  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    26   8.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +2

Query: 818 PGSPPPXPP---XRXRSXPPXPPXXG 886
           PG+PPP PP       S PP PP  G
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPPG 31


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = +2

Query: 812 PXPGSPP-PXPPXRXRSXPPXPPXXGXPVP 898
           P PG PP P  P      P  PP    PVP
Sbjct: 118 PLPGEPPLPDEPVPEEPLPGEPPLPNEPVP 147


>SPBC16G5.04 |mrpl23||mitochondrial ribosomal protein subunit
           L13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 157

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 443 QPTYNTATECHDVVVWLDRSELG 375
           +P Y+ A +C DVVV  D SE+G
Sbjct: 42  KPIYHPAADCGDVVVVTDCSEIG 64


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +2

Query: 812  PXPGSPPPXPPXRXRSXPPXPPXXGXPVP 898
            P P   PP P       P  PP    PVP
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 19/81 (23%), Positives = 22/81 (27%), Gaps = 1/81 (1%)
 Frame = +1

Query: 652  PFLAVRRVGXPCP-PWGAAPVPC*XXAGPGXXPRXPTRAFXRAXXPXPXRXXQXAXXXXA 828
            P + V     P P P    PVP      P   P  P  +      P P            
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091

Query: 829  PPXPPXTXPFXXAPXPXXXXP 891
            PP P  +      P P    P
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVP 1112


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = -2

Query: 897 GTGXPXXGGXGGLERXRXGGXGGGXPG 817
           G G P  G  GG    +  G GGG PG
Sbjct: 443 GGGFPGGGFPGGSYNSQGFGMGGGFPG 469


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -1

Query: 310 SPLIVVSSEIDYNLSCILLLLIARI 236
           SP++ +S+++ YN+  IL  ++ +I
Sbjct: 199 SPIVPISAQLKYNIDAILEYIVKKI 223


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 827 PPPXPPXRXRSXPPXPP 877
           PPP PP    + PP PP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,362
Number of Sequences: 5004
Number of extensions: 56548
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)