Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_O22
         (898 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.54 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   3.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   3.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   5.0  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   6.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.54
 Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +2

Query: 767  SXGRXXRRRXGX-RRXPXPGSP-PPXPPXR 850
            S G   RR  G  R  P  GSP PP PP R
Sbjct: 1836 SRGSVGRRSVGSARNIPVSGSPEPPPPPPR 1865



 Score = 22.6 bits (46), Expect = 5.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 537  RPANTSHLRVTRRDAIAPCPAAPTLAFPT 451
            RPA T HLR+   + I     + T+   T
Sbjct: 943  RPATTYHLRIVAENEIGASDPSDTVTIIT 971


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 812 PXPGSPPPXPPXRXRSXPPXPPXXG 886
           P PG PP  PP +  S     P  G
Sbjct: 46  PPPGGPPGAPPSQNPSQMMISPASG 70


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = -3

Query: 626 ARAADERQCEAGRRRGAVQS*AARRTRTGFAPRTLPTCASRAATPSHHVLPLPLSRSQLT 447
           AR   ++Q +  +++   QS ++     G +P + P   S AAT S    P P S +  T
Sbjct: 793 ARQQQQQQQQQQQQQQQQQS-SSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAAT 851


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 399 HYYIVTFCGSIICRLKRELGTREW 470
           H Y+    G II R KRE   + W
Sbjct: 128 HLYMGLLSGGIILRKKREFMQKIW 151


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 830 PPXPPXRXRSXPPXP 874
           PP PP R R  P  P
Sbjct: 638 PPLPPKRIRKMPSMP 652


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 298 VVSSEIDYNLSCILLL-LIARILFQNKKL*KQIKLV 194
           VVSS I + + CI++L +  R+    +K  K I+ V
Sbjct: 194 VVSSSISFYVPCIVMLGIYCRLYCYAQKHVKSIRAV 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,446
Number of Sequences: 438
Number of extensions: 5184
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)