Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_O19
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0164 - 1326002-1326409,1326410-1326428,1326523-1326647,132...    31   0.91 
07_03_1067 + 23728642-23728690,23728832-23729010                       29   6.4  
01_03_0005 + 11568545-11569119,11569179-11569191                       29   6.4  
02_05_0962 + 33114226-33114684,33114806-33114853,33115166-331152...    28   8.5  

>03_01_0164 -
           1326002-1326409,1326410-1326428,1326523-1326647,
           1327482-1327530,1328834-1328855,1328969-1329071
          Length = 241

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = -3

Query: 820 PXGGXXXXPPPXXFXXKXXPPXIFFXGGXKPQXG-FXPPG-XXPXXXWPP 677
           P GG    PP   +     PP  +  GG  P  G + PPG   P   +PP
Sbjct: 185 PYGGYPPAPPAQGYPPAAYPPAGYPQGGAYPPPGSYPPPGSYPPQGSYPP 234


>07_03_1067 + 23728642-23728690,23728832-23729010
          Length = 75

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
 Frame = -3

Query: 823 PPXGGXXXXPPPXXFXXKXX-PPXIFFXGGXKPQXGFXPPGXXPXXXWPPXF 671
           PP G     PP   +  K   PP  +   G  P  G+ P G  P   +PP +
Sbjct: 8   PPVG----VPPQQGYPGKDGYPPPGYPPAGYPPAQGYPPAGYPPQQGYPPPY 55


>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/90 (25%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
 Frame = +1

Query: 610 PQXXXXVVFPXPXKKXPFX---GGXGGAXXNXGFXXGXKXPFGVXXPXKKKXXGGXFFXX 780
           P     VV P P    P     GG GG             P+           GG ++  
Sbjct: 56  PPPPPPVVTPTPQCPPPPSYPSGGGGGGGGGTVMYTSPPPPYSGGGGGSSTGGGGIYYPP 115

Query: 781 XXGGGGXXXPXPXGGXXFFFFXKXPPPPXP 870
             GGGG        G         PPPP P
Sbjct: 116 PTGGGGGGGGGWQQGGGGGGAYPTPPPPNP 145


>02_05_0962 +
           33114226-33114684,33114806-33114853,33115166-33115286,
           33115760-33116008,33116149-33116302,33116493-33116985,
           33117524-33117596,33118285-33118343
          Length = 551

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 873 GGXGGGGXFXKKKKXXPPP 817
           GG GGGG F + +   PPP
Sbjct: 53  GGGGGGGGFLRLRSAPPPP 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,505,378
Number of Sequences: 37544
Number of extensions: 376255
Number of successful extensions: 4285
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3899
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)