Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_O19
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    33   0.35 
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.3  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    29   4.3  

>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
 Frame = -3

Query: 823  PPXGGXXXX----PPPXXFXXKXXPPXIFFXGGXKPQXGFXPPGXXPXXXWPP 677
            PP GG        PPP        PP +   GG  P+ G  PPG  P    PP
Sbjct: 1561 PPHGGMNGWRGGPPPPRGGSHCQGPPPLM--GGPPPRLGMPPPGPPPPNGGPP 1611


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
 Frame = +1

Query: 667 GGXGGAXXNXGFXXGXKXPFGVXXPXKKKXXGGXFFXXXXGGGGXXX--PXPXGGXXFFF 840
           GG  G     G   G     G          GG +     GGGG         GG  +  
Sbjct: 238 GGGSGGYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSA 297

Query: 841 FXKXPPPPXPP 873
               PPPP PP
Sbjct: 298 PAAAPPPPPPP 308



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 657 PXFXGKXGGXXXXGXXPGGXXPXWGFXPPXKKIXGGXXFXXKXXGGGXXXXPP 815
           P   G  GG    G   GG     G  PP     GG        GGG    PP
Sbjct: 23  PSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPP 75


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
 Frame = +1

Query: 667 GGXGGAXXNXGFXXGXKXPFGVXXPXKKKXXGGXFFXXXXGGGGXXX--PXPXGGXXFFF 840
           GG  G     G   G     G          GG +     GGGG         GG  +  
Sbjct: 238 GGGSGGYATGGSSGGGYSSGGSSGGGYSTGGGGGYAGGGGGGGGSSGGYAGSSGGGGYSA 297

Query: 841 FXKXPPPPXPP 873
               PPPP PP
Sbjct: 298 PAAAPPPPPPP 308



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = +3

Query: 657 PXFXGKXGGXXXXGXXPGGXXPXWGFXPPXKKIXGGXXFXXKXXGGGXXXXPP 815
           P   G  GG    G   GG     G  PP     GG        GGG    PP
Sbjct: 23  PSAGGGGGGGGCGGGCGGGCGGGGGCAPPPAPCGGGCGGGGGGCGGGGGCAPP 75


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/67 (32%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
 Frame = -3

Query: 823 PPXGGXXXXPPPXXFXX-KXXPPXIFFXGGXKPQXGFXPPGXXPXXXW-PPXFPXKXGXF 650
           P  GG    PPP         PP     GG  P  G  PP   P     PP  P   G F
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780

Query: 649 XXGXEKP 629
             G   P
Sbjct: 781 KGGPPPP 787



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/56 (35%), Positives = 20/56 (35%)
 Frame = +3

Query: 705 PGGXXPXWGFXPPXKKIXGGXXFXXKXXGGGXXXXPPXGGXXFFFFX*KXPPPPPP 872
           PGG  P  G  PP     G         GG     PP GG          PPPPPP
Sbjct: 732 PGGLPPITGGPPPPPPPGG----LPPISGGPPPPPPPPGGCP------PPPPPPPP 777


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/67 (32%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
 Frame = -3

Query: 823 PPXGGXXXXPPPXXFXX-KXXPPXIFFXGGXKPQXGFXPPGXXPXXXW-PPXFPXKXGXF 650
           P  GG    PPP         PP     GG  P  G  PP   P     PP  P   G F
Sbjct: 721 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 780

Query: 649 XXGXEKP 629
             G   P
Sbjct: 781 KGGPPPP 787



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/56 (35%), Positives = 20/56 (35%)
 Frame = +3

Query: 705 PGGXXPXWGFXPPXKKIXGGXXFXXKXXGGGXXXXPPXGGXXFFFFX*KXPPPPPP 872
           PGG  P  G  PP     G         GG     PP GG          PPPPPP
Sbjct: 732 PGGLPPITGGPPPPPPPGG----LPPISGGPPPPPPPPGGCP------PPPPPPPP 777


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/67 (32%), Positives = 22/67 (32%), Gaps = 2/67 (2%)
 Frame = -3

Query: 823 PPXGGXXXXPPPXXFXX-KXXPPXIFFXGGXKPQXGFXPPGXXPXXXW-PPXFPXKXGXF 650
           P  GG    PPP         PP     GG  P  G  PP   P     PP  P   G F
Sbjct: 304 PITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGF 363

Query: 649 XXGXEKP 629
             G   P
Sbjct: 364 KGGPPPP 370



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 20/56 (35%), Positives = 20/56 (35%)
 Frame = +3

Query: 705 PGGXXPXWGFXPPXKKIXGGXXFXXKXXGGGXXXXPPXGGXXFFFFX*KXPPPPPP 872
           PGG  P  G  PP     G         GG     PP GG          PPPPPP
Sbjct: 315 PGGLPPITGGPPPPPPPGG----LPPISGGPPPPPPPPGGCP------PPPPPPPP 360


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 824 PPXGXGXXXPPPPXFXXKXXPP 759
           PP G G   PPPP F     PP
Sbjct: 76  PPPGPGGIPPPPPMFAGGIPPP 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,625,288
Number of Sequences: 27780
Number of extensions: 244180
Number of successful extensions: 1602
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1367
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)