Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_O14
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    38   0.002
SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomy...    29   0.66 
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    26   6.1  

>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 7/65 (10%)
 Frame = +1

Query: 520 RLGHGGGYYDKFITNLR---LNPETAPKI--VAVAFNCQVVD--EVPTNEQDQKVDEVIF 678
           RLGHG GYYD +I+  +   L  E+   +  V +    Q++   E+P + +DQK+D ++ 
Sbjct: 137 RLGHGKGYYDNYISKYQSWALQKESRANMFKVGICLKEQILPNREIPMDTRDQKLDALVT 196

Query: 679 AE*IL 693
            E ++
Sbjct: 197 PEKVI 201


>SPAC31A2.04c |||20S proteasome component beta 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 194

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = -2

Query: 747 VGTPNILWVRFLHVSV*LQYLFSEYNLVHFLVLFVSRHLVDNLTVKSHCNYLRSCF 580
           +G P + W+ +L   V + Y    Y+  + L +F  R+   +LT+      ++ CF
Sbjct: 111 LGKPELFWLDYLATCVRVPYACQGYSSFYCLSIF-DRYYKPDLTIDEAVRIMKLCF 165


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 335 RGAAAFVPQYAGGRMRMLHLETGDEQTMPKTKHGISQHGKD 457
           R     +PQ    R+ ++H  T +++ M KT   +S   KD
Sbjct: 584 RSLKTIIPQVNPRRLVLIHASTEEKEDMKKTCASLSAFTKD 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,495,547
Number of Sequences: 5004
Number of extensions: 73907
Number of successful extensions: 194
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)