Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_O14
         (877 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032656-2|CAA21728.1|  206|Caenorhabditis elegans Hypothetical ...    69   6e-12
U27312-12|AAA68255.1|  451|Caenorhabditis elegans Hypothetical p...    31   1.4  
Z82259-2|CAB05129.1|  474|Caenorhabditis elegans Hypothetical pr...    29   5.8  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    29   5.8  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    29   5.8  
Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL032656-2|CAA21728.1|  206|Caenorhabditis elegans Hypothetical
           protein Y106G6E.4 protein.
          Length = 206

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
 Frame = +2

Query: 116 MSPIKPNPAKALLRNEIAAKIAALTNEEKKRQSQIVYEKVINHSWYKSSSRIALYMSTEN 295
           MS IK    K+ LR  +   +  ++ EE +RQ++ V+EK+I   W++ S R+++Y+ST  
Sbjct: 1   MSAIKE--VKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG 58

Query: 296 EIDTAPLIKHIQARGAAAFVPQYAGGRMRMLHLETGDE---QTMPKTKHGISQ 445
           EI T  +I+     G   F+PQ+  G   M  +   D+     +P T  GI Q
Sbjct: 59  EIQTDSIIQKALEMGKEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGIRQ 111



 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
 Frame = +1

Query: 493 GWRFLXSGDRLGHGGGYYDKFI-TNLRLNPETAPKIVAVAFNCQVVDEVPTNEQDQKVDE 669
           G  F   G R GHG GYYD+F  T+ +  PE +PK + +A   Q++  +P +E D ++DE
Sbjct: 134 GVAFSPYGLRCGHGKGYYDRFFSTHHKHFPENSPKKIGLALREQIIGTIPISETDVELDE 193

Query: 670 VIF 678
           VI+
Sbjct: 194 VIY 196


>U27312-12|AAA68255.1|  451|Caenorhabditis elegans Hypothetical
           protein F26A1.13 protein.
          Length = 451

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +3

Query: 90  VILCN*EAE*VQ*NQIQPKPCYVTKLPLKSPP*RM----KRKKDNRKLFMKRLSTTHGTN 257
           ++L N E E     +++PKP +  K+     P R+    K KK+    F+K+ S  H   
Sbjct: 247 ILLSNGEVENTYAVKLKPKPTWSKKVASSPSPLRLSLPKKSKKEEENHFLKKRSGRHSQL 306

Query: 258 HQVVLLS 278
            ++ LL+
Sbjct: 307 EEIQLLA 313


>Z82259-2|CAB05129.1|  474|Caenorhabditis elegans Hypothetical
           protein C28D4.2 protein.
          Length = 474

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 92  YLVQLGGRMSPIKPNPAKALLRNEIAAKIAALTNE 196
           +LV+L   ++PI+  P KALLR    + I  L +E
Sbjct: 126 FLVELPAHLTPIQMEPEKALLRVHCQSDIDQLLSE 160


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
            F29D11.1 protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -2

Query: 459  WSFPC*DIPCLVFGMVCSSPVSKCNILMRPPAYCGTKAAAPLAWMCLIRGAV 304
            ++F C D  C++ G  C S     +     P YC T++      +C  R  +
Sbjct: 2796 YNFQCGDGSCILLGATCDSKPDCADASDENPNYCNTRSCPEDYNLCTNRRCI 2847


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
            protein protein.
          Length = 4753

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = -2

Query: 459  WSFPC*DIPCLVFGMVCSSPVSKCNILMRPPAYCGTKAAAPLAWMCLIRGAV 304
            ++F C D  C++ G  C S     +     P YC T++      +C  R  +
Sbjct: 2796 YNFQCGDGSCILLGATCDSKPDCADASDENPNYCNTRSCPEDYNLCTNRRCI 2847


>Z82076-2|CAB04938.1|  360|Caenorhabditis elegans Hypothetical
           protein W07G1.6 protein.
          Length = 360

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 781 NIFFKDYRTKNRWHSEHSLGAISSCFCI 698
           + FF DY  K R +  ++L A S C CI
Sbjct: 153 SFFFSDYEKKQRSYLGYTLLATSQCCCI 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,661,993
Number of Sequences: 27780
Number of extensions: 425435
Number of successful extensions: 1012
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)