Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_O09
         (979 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.7  
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom...    28   1.7  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    28   1.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.0  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/45 (35%), Positives = 16/45 (35%)
 Frame = -3

Query: 824 GGGPGXGXPPXXXXGPGGAXXAPGXX*GPXXXXXGPPRGXGXXXG 690
           G G   G P     GPGG    PG   G      G P G G   G
Sbjct: 222 GHGGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPG 266



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 17/43 (39%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
 Frame = -3

Query: 824 GGGPGX--GXPPXXXXGPGGAXXAPGXX*GPXXXXXGPPRGXG 702
           GGGPG   G P     GPGG     G   G      G P G G
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHG 269



 Score = 27.1 bits (57), Expect = 4.0
 Identities = 15/35 (42%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
 Frame = -3

Query: 836 PPXXGGGPGX--GXPPXXXXGPGGAXXAPGXX*GP 738
           P   GGGPG   G       GPGG    PG   GP
Sbjct: 237 PGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGP 271



 Score = 25.8 bits (54), Expect = 9.3
 Identities = 14/39 (35%), Positives = 14/39 (35%)
 Frame = -1

Query: 775 GGXSGPPGXXEXXXGXXXAPXGGAGXXWGNPPXGPRXXG 659
           GG  G PG  E   G      GG G   G    GP   G
Sbjct: 224 GGFGGGPGGFEGGPGGFGGGPGGFGGGLGGFGGGPGGFG 262


>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
           Smb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 18/50 (36%), Positives = 18/50 (36%)
 Frame = +1

Query: 676 PGGGFPXXXPXPLGGPXXXXXGPXXXPGAXXAPPGPXXXXGGXPXPGPPP 825
           PG   P     PLG       GP    G   APP P     G P PG  P
Sbjct: 98  PGVARPAGRGIPLGQAPVGLAGPVRGVG-YTAPPPPAGFGRGAPPPGFRP 146


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 836 PPXXGGGPGXGXPPXXXXGPGGA 768
           PP   GGPG G       GPGGA
Sbjct: 78  PPGAEGGPGAGFGGFPGAGPGGA 100


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
 Frame = +1

Query: 703 PXPLGGPXXXXXGPXXXPGAXXAPPGPXXXXGGXPXPGPPP---XXGGXRVXXLSP 861
           P P   P           G    PP P     G P P PPP     GG R    +P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797



 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/42 (30%), Positives = 14/42 (33%)
 Frame = +2

Query: 761 PXXPPRDRPXXXGXXXPPAPRPXXGAXGXXAFPPXXGXPPGP 886
           P  PP       G   PP P P   A G   + P     P P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 17/68 (25%), Positives = 19/68 (27%)
 Frame = +1

Query: 622 PPXXXXAXXGRXPXXXGAPGGGFPXXXPXPLGGPXXXXXGPXXXPGAXXAPPGPXXXXGG 801
           PP       G+ P   G+     P   P P          P   P    APP P      
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLP---PQGRSAPPPPPPRSAP 370

Query: 802 XPXPGPPP 825
                PPP
Sbjct: 371 STGRQPPP 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,728
Number of Sequences: 5004
Number of extensions: 26275
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 503290872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)