Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_N20
         (880 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    31   0.22 
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    26   6.1  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    26   8.1  

>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 635 CSSFGEICDYNKEL*YDNRTKIMFKHKISINYSRISTT 522
           C  +GE C Y K + +DNR  +    +  I Y+ +ST+
Sbjct: 27  CMVYGEECRYVKRVKHDNRAAVQENERYPILYTPLSTS 64


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 347 WYSQGHENEEMRQTRRLLEVME 412
           W  QGH      QTR++L+++E
Sbjct: 637 WKKQGHRTLLFSQTRQMLDILE 658


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -2

Query: 834 ILIYFFK*CINXYI*SINXTLHTLICI*HNTYIXIYYLY 718
           I+I +F  C    I  +N  LHT+ CI    Y   +Y Y
Sbjct: 420 IIIAYFLGCRREDIAYLNVPLHTVYCIEPQPYGTDFYQY 458


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,142
Number of Sequences: 5004
Number of extensions: 62144
Number of successful extensions: 147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)