Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP23_F_N17
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 134 8e-32
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 134 8e-32
Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical pr... 29 3.4
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 3.4
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 29 3.4
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 29 3.4
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 29 3.4
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 7.9
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 7.9
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 7.9
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 134 bits (324), Expect = 8e-32
Identities = 60/101 (59%), Positives = 78/101 (77%), Gaps = 2/101 (1%)
Frame = +1
Query: 199 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-- 372
+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K
Sbjct: 36 RTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTN 95
Query: 373 FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 495
+ + LK P+K++K + +FEERYK+GKNKWFF KLRF
Sbjct: 96 INKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = +3
Query: 93 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSXQAIRACLRRWYRQVPPESAQEDGKE 272
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG S + + + P + ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 134 bits (324), Expect = 8e-32
Identities = 60/101 (59%), Positives = 78/101 (77%), Gaps = 2/101 (1%)
Frame = +1
Query: 199 KPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK-- 372
+ Y HA +AGIDRYP KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K
Sbjct: 36 RTYPHAIIAGIDRYPLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTN 95
Query: 373 FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 495
+ + LK P+K++K + +FEERYK+GKNKWFF KLRF
Sbjct: 96 INKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
Score = 62.5 bits (145), Expect = 4e-10
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = +3
Query: 93 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSXQAIRACLRRWYRQVPPESAQEDGKE 272
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG S + + + P + ++ GK+
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
>Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical
protein F45E6.4 protein.
Length = 333
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -1
Query: 340 LASSDYSLQP*RKALSWTSCGFYS--FPSSCALSGGTCRYQRRRHARMACXEVPSS*FLT 167
LAS++Y + P + A ++ +CG + FP +C TC Q + C EVP S +L
Sbjct: 195 LASANYGMCPCQHAFAFPACGMETGFFPGTCPEM--TCSSQDVNISE-TCGEVPYSNYLM 251
Query: 166 TI 161
+
Sbjct: 252 NL 253
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 99 KIMKPGKVVLVLSGRYAGRKAIVVK 173
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 223 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 372
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 223 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 372
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 430
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 29.5 bits (63), Expect = 3.4
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 223 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK 372
AG++R ++ + NK KR KI K YNHL+P T+D+S K
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVP---TIDYSAMK 456
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -3
Query: 443 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 348
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1282
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -3
Query: 443 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 348
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1185
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Frame = -3
Query: 443 SKRTRVLK-RSFLRLAGSFRSFALNFSKLKSTV 348
S+ T V + +SFL L G +R F LNF+++ S++
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSL 1196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,742,540
Number of Sequences: 27780
Number of extensions: 293874
Number of successful extensions: 824
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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