Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_N13
         (866 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    28   1.5  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    27   3.5  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    27   3.5  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   4.6  
SPAC2E12.02 |hsf1|hstf, hsf|transcription factor Hsf1|Schizosacc...    27   4.6  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.0  

>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +2

Query: 143 PVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAEYL 265
           PVI  A+ I E SN    PPP  V+      T   +Y EYL
Sbjct: 33  PVIYNASNITEVSNSTTVPPPPFVNTTAPNGTCLGNYNEYL 73


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 559 PAPAYIILLINPPLSPNMKPVRP 491
           P+PA+ + L +P  +PN+ PV P
Sbjct: 255 PSPAHPVDLSSPETAPNISPVSP 277


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +3

Query: 297 TLNQHYYLQXRALREQVQTFVDQTDFIKHSIQDNYHEFQDKSEWIFKYLREEE 455
           T N+HY  + + L  QVQ  + + D  ++ I       +  + ++ K L E+E
Sbjct: 494 TENKHYEQETKDLARQVQVLLHELDLCENGIVLGVDSRKKINSYVEKSLTEDE 546


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
 Frame = -2

Query: 547 YIILLINPPLSPNMKPVRPPIATAPYL-----TSLFSSSRK 440
           Y   ++  P   N+ P+ PP A+ PY      TSLF S RK
Sbjct: 311 YTSNIVENPSEDNLSPLPPP-ASGPYSQEEEETSLFKSQRK 350


>SPAC2E12.02 |hsf1|hstf, hsf|transcription factor
           Hsf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 609

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -2

Query: 598 YLPGKQTSPIAVVPAPAYIILLIN-PPLSPNMKPVRPPIATAPYLTSLFSSSRKYLKIH 425
           YL GKQ  P  V+P    ++L    P +SP  +P       +P  T+  SSS     +H
Sbjct: 230 YLDGKQKPPSKVMPKSRRLLLEAKYPTVSPTNEP-SAHSRPSPQGTTANSSSASISSLH 287


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 589 GKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPP 488
           G+  +  A+     YI+L + PP SP   P RPP
Sbjct: 415 GRLLAAAAIARICTYIMLYLKPPSSP--WPTRPP 446


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,440,895
Number of Sequences: 5004
Number of extensions: 71533
Number of successful extensions: 240
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)