Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_N13
         (866 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50874-1|CAA90763.1|  377|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    29   4.3  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    28   7.5  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    28   7.5  
Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical pr...    28   9.9  
Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical pr...    28   9.9  
Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical p...    28   9.9  

>Z50874-1|CAA90763.1|  377|Caenorhabditis elegans Hypothetical
           protein R10E4.1 protein.
          Length = 377

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = +3

Query: 285 RRQVTLNQHYYLQXRALREQVQTFVDQTDFIKHSIQDNYHEFQDKSEWIFKYLREEENKE 464
           R+ VT     YL   A R Q Q  VD  +    +   +YHE+Q K+E  F Y+ + + + 
Sbjct: 210 RQPVTKKSLDYLLQLADRYQCQPIVDACEMFMCA---HYHEYQKKTEKCFSYVEKYKMQR 266

Query: 465 V 467
           V
Sbjct: 267 V 267


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 592 PGKQTSPIAVVPAPAYIILLINPPLSPNMKPVRPPIATAP 473
           P + +S + + PAP+ +I  + PP  P   P +PP + AP
Sbjct: 246 PSQFSSTVPLPPAPSSLIQNLPPPPQPAFLP-QPPTSYAP 284


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 104 KVVMSSMGAIALVPVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAE 259
           KV M+   +  + PV+  + PI+  SNGP++ P    S L  +  P     E
Sbjct: 505 KVAMNRKTSNPVPPVLNQSVPISITSNGPSRHPSS--SSLTTFRKPSTSNRE 554


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 104 KVVMSSMGAIALVPVIKAAAPINEESNGPAKPPPMRVSELPLYETPHADYAE 259
           KV M+   +  + PV+  + PI+  SNGP++ P    S L  +  P     E
Sbjct: 505 KVAMNRKTSNPVPPVLNQSVPISITSNGPSRHPSS--SSLTTFRKPSTSNRE 554


>Z81530-8|CAB04305.2|  329|Caenorhabditis elegans Hypothetical
           protein F36D1.3 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 509 YEACETTHCNSSISYFFIFFLAQILKDPF*LILEFVVVIL--NGVFDEIC 366
           ++A +TT  +S   + F+ FL   + + F +I +F+VV +   G+   IC
Sbjct: 48  FDANQTTMASSIQKHLFMAFLFMQIANFFYIITDFIVVRIPATGILTSIC 97


>Z73105-4|CAA97443.2| 1406|Caenorhabditis elegans Hypothetical protein
            T11G6.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 541  ILLINPPLSPNMKPVRPPIATAPYLTSLFSSSRKY 437
            +++++PP  P+ K ++PP+A  P +++L      Y
Sbjct: 1134 VIILSPPPHPSQKKIQPPVA-PPGISNLNRPGNNY 1167


>Z69384-10|CAA93420.2| 1406|Caenorhabditis elegans Hypothetical
            protein T11G6.5 protein.
          Length = 1406

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = -2

Query: 541  ILLINPPLSPNMKPVRPPIATAPYLTSLFSSSRKY 437
            +++++PP  P+ K ++PP+A  P +++L      Y
Sbjct: 1134 VIILSPPPHPSQKKIQPPVA-PPGISNLNRPGNNY 1167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,048,671
Number of Sequences: 27780
Number of extensions: 402479
Number of successful extensions: 1161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)