Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_N11
         (907 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.91 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.4  
SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyc...    26   6.4  
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 12/26 (46%), Positives = 12/26 (46%)
 Frame = +1

Query: 802 PPPXXPXGXXXPPPXKPPXXGWGAPP 879
           PPP    G   PPP  P   G G PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPP 777



 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = +1

Query: 793 PXXPPPXXPXGXXXPPPXKPPXXGWGAPP 879
           P   PP  P     PPP  PP      PP
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPP 776



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +1

Query: 793 PXXPPPXXPXGXXXPPPXKPP 855
           P  PPP    G   PPP  PP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
 Frame = -3

Query: 890 PPXXGGAPXPXFGGXXGGGXXFPXGXXGG-GXXGXFXW 780
           P   GG P   FGG  GG    P G  GG G  G   W
Sbjct: 237 PGGFGGGPG-GFGGGLGGFGGGPGGFGGGPGGHGGPGW 273


>SPCC830.07c |psi1|psi|DNAJ domain protein Psi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = -3

Query: 893 PPPXXGGAPXPXFGGXXGGG 834
           PPP   G P   FGG  G G
Sbjct: 77  PPPGAEGGPGAGFGGFPGAG 96


>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -3

Query: 893 PPPXXGGAPXPXFGGXXGGGXXFPXGXXGGGXXG 792
           PPP  G    P  GG   G    P G  GG   G
Sbjct: 99  PPPPRGPLFGPRIGGGHHGPLHGPHGGFGGRGGG 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.147    0.534 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,974
Number of Sequences: 5004
Number of extensions: 13992
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)