Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_N10
         (844 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-6|AAA68338.1|  188|Caenorhabditis elegans Hypothetical pr...    69   4e-12
AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical...    30   1.8  
U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interact...    29   5.5  
U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical pr...    28   9.5  
U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical pr...    28   9.5  
AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical ...    28   9.5  

>U28928-6|AAA68338.1|  188|Caenorhabditis elegans Hypothetical
           protein C44B7.7 protein.
          Length = 188

 Score = 68.9 bits (161), Expect = 4e-12
 Identities = 36/85 (42%), Positives = 47/85 (55%)
 Frame = +1

Query: 202 FLYFAYGSNLLAKRIHINNPTAIFYSTAKLQDYRLDFNMYTELWNGNAATIVEDPGEYVW 381
           F YFA+GSNLL  RI      A +    KL ++RL+F  Y+E W G  ATI E  G+ VW
Sbjct: 24  FYYFAFGSNLLGDRIRYRQKGAEYDCNGKLDNFRLEFANYSERWQGALATIKEAEGKEVW 83

Query: 382 GDLWLINNSDLKSLXRARASGFRRL 456
           G +W + N    SL   +  G+ RL
Sbjct: 84  GCVWKMPNEYSDSLDE-QEFGYHRL 107



 Score = 34.7 bits (76), Expect = 0.083
 Identities = 32/86 (37%), Positives = 40/86 (46%)
 Frame = +2

Query: 419 ALXEQELVGSGGYFARNVTVTTPGGKQLQARTYQETVDPPKLKEGELLPEDRRPSNTYLG 598
           +L EQE     GY    V V TP G  +  RTYQ +         +L  +   PS  Y  
Sbjct: 96  SLDEQEF----GYHRLMVPVQTPKGV-ITCRTYQFS---------DLKADPMAPSPHYKL 141

Query: 599 VIILGAFESNLPSEYIAKLFNFVTNG 676
           VI  GA E+ LP++YI KL     NG
Sbjct: 142 VITEGAKENKLPADYIQKLEAIEDNG 167


>AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.4 protein.
          Length = 546

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +1

Query: 244 IHINNPTAIFYSTAKLQDYRLDFNMYTELWNGNAATIVE 360
           ++ NNPTAI Y  AKL     + N    + NG   T VE
Sbjct: 395 VYANNPTAIAYHEAKLLWPDENVNCVVSVGNGRTVTSVE 433


>U88179-1|AAB52661.3|  216|Caenorhabditis elegans Hypothetical
           protein R57.2 protein.
          Length = 216

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -2

Query: 453 PPEPTSSCSXKALQIAVVYKPEIAPHILSRVFNNCCRVTIPKLCVHV 313
           P +P   C    +     Y+P  +  I +++F +CC++ +P+ C H+
Sbjct: 74  PRKPLGKCGTSEVN----YQPCTSKGIANKLFLSCCQLYVPEECHHM 116


>AF106573-10|AAC78155.2|  862|Caenorhabditis elegans Gex interacting
           protein protein 12 protein.
          Length = 862

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/41 (29%), Positives = 27/41 (65%)
 Frame = +3

Query: 204 LVFRVWKQLIGEKNSYK*SDSDIL*HCQIAGLPVRFQHVHR 326
           +++ +WK+ IG+KN    +D+ +L H + +  P+++ +V R
Sbjct: 810 MLYMLWKECIGQKNIIAIADACLLAHLRKSD-PIKYLNVKR 849


>U41012-7|AAM75375.1|  639|Caenorhabditis elegans Hypothetical
           protein C06A6.2a protein.
          Length = 639

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 163 GLLRCDSTQYEDKFLYFAYGSNLLAKRIHINNPTAIFYSTAKLQDYRLDFNMYT 324
           G++  ++T+ EDK+        ++A+ I   +P +    T  LQ     +NM T
Sbjct: 573 GVINGNNTEVEDKWTLLGRMIAMMAREIETRDPMSACELTRDLQQVIFQYNMKT 626


>U41012-6|AAM75376.1|  642|Caenorhabditis elegans Hypothetical
           protein C06A6.2b protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/54 (25%), Positives = 26/54 (48%)
 Frame = +1

Query: 163 GLLRCDSTQYEDKFLYFAYGSNLLAKRIHINNPTAIFYSTAKLQDYRLDFNMYT 324
           G++  ++T+ EDK+        ++A+ I   +P +    T  LQ     +NM T
Sbjct: 576 GVINGNNTEVEDKWTLLGRMIAMMAREIETRDPMSACELTRDLQQVIFQYNMKT 629


>AF098986-3|AAC67424.1|  832|Caenorhabditis elegans Hypothetical
           protein C36C9.1 protein.
          Length = 832

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +3

Query: 204 LVFRVWKQLIGEKNSYK*SDSDIL*HCQIAGLPVRFQHVHRALEW 338
           +++ +WK+ IG+KN    +D+ +L + + +  PVR+ +  R  EW
Sbjct: 780 MLYMLWKECIGQKNIISIADACLLVYLRKSD-PVRYLNAKR--EW 821


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,368,180
Number of Sequences: 27780
Number of extensions: 375200
Number of successful extensions: 842
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)