Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP23_F_N06
         (934 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0625 - 16325827-16326495                                         31   0.99 
05_03_0600 + 16031952-16032614                                         31   0.99 
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   4.0  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    29   5.3  
11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198     28   9.2  

>05_03_0625 - 16325827-16326495
          Length = 222

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 120 ALLHCSPPARASLNYPRTLLTKPSRXNCTTASSPAT 227
           A LHC+PP+    + P  L   P+   C+TA SP++
Sbjct: 2   AFLHCTPPSLLLPSPPFFLPPPPAAPRCSTALSPSS 37


>05_03_0600 + 16031952-16032614
          Length = 220

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 120 ALLHCSPPARASLNYPRTLLTKPSRXNCTTASSPAT 227
           A LHC+PP+    + P  L   P+   C+TA SP++
Sbjct: 2   AFLHCTPPSLLLPSPPFFLPPPPAAPRCSTALSPSS 37


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +2

Query: 182  QALEEXLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTMEYCYKLWVG 361
            Q LE    N I+T   D  +RQ L        S++ N++ +  +D  +  +E C  +WVG
Sbjct: 1147 QLLELGKNNEIVT---DQVLRQELALVMPKIYSLLSNLIGSDEMDIVKVVLEGCRWIWVG 1203

Query: 362  NG 367
            +G
Sbjct: 1204 DG 1205


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = +2

Query: 248 SLEYESQGKGSIIQNVVNNLIIDKRRNTME------YCYKLWV-GNGQEIVRKYFPLNFR 406
           S++ ++   G ++  +V+ L I   + T        Y ++LW  GN  E++ K+F  ++ 
Sbjct: 684 SVKSDTYSFGVLLLEIVSGLKISSSKLTPNFFSLTAYAWRLWKDGNATELLDKFFVDSYP 743

Query: 407 THHGRKLCQ--DHLQKLQP 457
            H     CQ  D L   +P
Sbjct: 744 LHEAFSFCQSDDRLTPAKP 762


>11_06_0719 + 26612152-26612856,26613102-26613110,26614272-26615198
          Length = 546

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +3

Query: 84  KAPHKMQLLVVFALLHCSPPARASLNYPRTLLTKPSRXNCTTASSP------ATTTVLSV 245
           K  H++   +V  LLH  P +R+S N   T L  PS  + +++S P      A T VL V
Sbjct: 5   KLSHRLFSALVSLLLHGKPISRSSSN-TNTTLPHPSLLHKSSSSFPPMEKLAAKTLVLDV 63

Query: 246 RAWNMRAKARAP 281
               +R+ +  P
Sbjct: 64  EGGLLRSSSLFP 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,378,914
Number of Sequences: 37544
Number of extensions: 399915
Number of successful extensions: 1063
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2670960720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)